Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01994 ATGGATGCAATAGAGGAAGAAGTGAGTATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTCGATTCTGGAAAGTCGACCACCACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAATATGATTACTGGTACTTCCCAGGCTGACTGTGCTATTCTTATCATTGATTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACACGTGAACATGCCCTTCTTGCCTTTACCCTTGGTATGGATGCCACGACTCCCAAATACTCTAGGTCTAGGTACGATGAAATCGTCAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGCCCTACCCTTCTGGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATAGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACCTTTGCCCCATCTGGACTTACTACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTTCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTCGCCGTGAAAGATCTCAAGCGTGGCTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACGAAGATCGACAGACGATCTGGAAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAAAATGGGGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCTATGGTGGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGCGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGGTAACATGGGTAAGGAAAAAATTCACATTAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTATGCCTGGGTGTTGGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATTACAATTGATATTGCTCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGCTGTTCTTATCATTGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCTTTTACTCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAGTACTCAAAATCTAGGTACGATGAAATCGTGAAGGAAGTTTCTTCTTACCTCAAGAAGGTTGGGTATAACCCAGACAAAATTCCCTTCGTCCCGATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCTACAAACCTCGACTGGTACAAGGGACCAACTCTTCTTGAGGCCCTTGACCTGATCCAAGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTGGAAACTGGTATTATAAAGCCCGGTATGGTTGTCACCTTTGCCCCAACTGGACTGACTACTGAGGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTACGTTGCCTCAAATTCCAAGGACGACCCTGCTAAGGAAGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCATCCAGGGCAGATTGGAAATGGCTATGCTCCTGTCCTCGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGAAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAAAACGGTGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACATTCTCCGAGTATCCTCCACTTGGACGATTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTTGGCGTCATCAAGGCTGTTGAGAAGAAGGATCCATCCGGTGCCAAGGTCACAAAATCTGCTGCTAAGAAATCGGGCAAATCCTCAAACCCTATTATTAAGCCCTCCACTCCAATTTCCATTCTCCATCTCTCGCCGCAAGGGTTTAAGAGCTCAGCTTTCTCGTCCCGTTCCGATTCAAGCATGGGTAAGGAGAAAATTCACATTAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGTTGGACAAGCTCAAGGCCGAGCGAGAGCGTGGTATCACAATTGACATTGCCCTGTGGAAATTTGAGACCACCAAGTACTATTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTCCTTATCATTGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACGCGTGAACACGCCCTTCTTGCCTTTACTCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCAAAATCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCTTACCTCAAGAAGGTTGGGTACAACCCAGACAAAATTCCCTTCGTCCCGATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCTACAAACCTCGACTGGTACAAGGGACCAACCCTTCTTGAGGCCCTTGACCTGATCCAAGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTTCCAGTGGGTCGTGTGGAAACTGGTATTATCAAGCCCGGTATGGTTGTCACCTTTGCCCCAACTGGACTGACTACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGATAATGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTACGTTGCCTCAAATTCCAAGGATGACCCTGCTAAGGAAGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCATCCAGGGCAGATTGGAAATGGCTATGCTCCTGTCCTCGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGTAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAAAACGGAGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACATTCTCCGAGTATCCTCCACTTGGACGATTTGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTCGAGAAGAAGGACCCATCCGGCGCTAAAGTCACCAAGTCTGCAGCTAAGAAATCAGGGAAGTGA 4143 46.85 MDAIEEEVSMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGMDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGNMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGKSSNPIIKPSTPISILHLSPQGFKSSAFSSRSDSSMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37509304 37524581 + ClCG09G020500.1 Cla09g01994 281414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01994 1380 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 325 428 IPR009001 -
Cla09g01994 1380 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 936 1161 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1257 1360 IPR009001 -
Cla09g01994 1380 CDD EF1_alpha 457 675 - -
Cla09g01994 1380 Gene3D Translation factors 322 429 - -
Cla09g01994 1380 Gene3D Translation factors 1254 1361 - -
Cla09g01994 1380 Gene3D Translation factors 771 878 - -
Cla09g01994 1380 CDD EF1_alpha_III 1254 1357 - -
Cla09g01994 1380 Pfam Elongation factor Tu C-terminal domain 321 428 IPR004160 -
Cla09g01994 1380 Pfam Elongation factor Tu C-terminal domain 770 877 IPR004160 -
Cla09g01994 1380 Pfam Elongation factor Tu C-terminal domain 1253 1360 IPR004160 -
Cla09g01994 1380 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 14 229 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 SUPERFAMILY Translation proteins 1162 1252 IPR009000 -
Cla09g01994 1380 CDD EF1_alpha 18 226 - -
Cla09g01994 1380 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 453 678 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 509 524 IPR031157 -
Cla09g01994 1380 Gene3D - 2 227 IPR027417 -
Cla09g01994 1380 Gene3D - 923 1159 IPR027417 -
Cla09g01994 1380 Gene3D - 440 676 IPR027417 -
Cla09g01994 1380 CDD EF1_alpha 940 1158 - -
Cla09g01994 1380 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 10 446 - -
Cla09g01994 1380 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 932 1378 - -
Cla09g01994 1380 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 70 85 IPR031157 -
Cla09g01994 1380 MobiDBLite consensus disorder prediction 884 907 - -
Cla09g01994 1380 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 992 1007 IPR031157 -
Cla09g01994 1380 Pfam Elongation factor Tu domain 2 247 312 IPR004161 GO:0005525
Cla09g01994 1380 Pfam Elongation factor Tu domain 2 1179 1244 IPR004161 GO:0005525
Cla09g01994 1380 Pfam Elongation factor Tu domain 2 696 761 IPR004161 GO:0005525
Cla09g01994 1380 CDD EF1_alpha_III 771 874 - -
Cla09g01994 1380 CDD EF1_alpha_II 229 319 - -
Cla09g01994 1380 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 10 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla09g01994 1380 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 449 881 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla09g01994 1380 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 932 1364 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla09g01994 1380 Pfam Elongation factor Tu GTP binding domain 15 222 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 Pfam Elongation factor Tu GTP binding domain 938 1152 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 Pfam Elongation factor Tu GTP binding domain 455 669 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 PRINTS GTP-binding elongation factor signature 536 546 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 PRINTS GTP-binding elongation factor signature 552 563 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 PRINTS GTP-binding elongation factor signature 596 605 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 PRINTS GTP-binding elongation factor signature 516 524 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 PRINTS GTP-binding elongation factor signature 457 470 IPR000795 GO:0003924|GO:0005525
Cla09g01994 1380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 248 IPR027417 -
Cla09g01994 1380 SUPERFAMILY Translation proteins 679 769 IPR009000 -
Cla09g01994 1380 Hamap Elongation factor Tu [tuf]. 933 1363 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla09g01994 1380 CDD EF1_alpha_II 1161 1251 - -
Cla09g01994 1380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 697 IPR027417 -
Cla09g01994 1380 Gene3D Translation factors 228 315 - -
Cla09g01994 1380 Gene3D Translation factors 677 764 - -
Cla09g01994 1380 Gene3D Translation factors 1160 1247 - -
Cla09g01994 1380 SUPERFAMILY Translation proteins 225 320 IPR009000 -
Cla09g01994 1380 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 449 895 - -
Cla09g01994 1380 PANTHER TRANSLATION FACTOR 932 1378 - -
Cla09g01994 1380 PANTHER TRANSLATION FACTOR 449 895 - -
Cla09g01994 1380 PANTHER TRANSLATION FACTOR 10 446 - -
Cla09g01994 1380 MobiDBLite consensus disorder prediction 892 907 - -
Cla09g01994 1380 CDD EF1_alpha_II 678 768 - -
Cla09g01994 1380 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 774 877 IPR009001 -
Cla09g01994 1380 CDD EF1_alpha_III 322 425 - -
Cla09g01994 1380 Hamap Elongation factor Tu [tuf]. 450 880 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla09g01994 1380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1180 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01062 Cla-Chr4:25795571 Cla09g01994 Cla-Chr9:37509304 6.56E-80 dispersed
Cla05g01791 Cla-Chr5:29796490 Cla09g01994 Cla-Chr9:37509304 4.67E-80 dispersed
Cla06g00765 Cla-Chr6:10170898 Cla09g01994 Cla-Chr9:37509304 0 dispersed
Cla09g00627 Cla-Chr9:5909184 Cla09g01994 Cla-Chr9:37509304 2.70E-30 dispersed
Cla09g01994 Cla-Chr9:37509304 Cla04g00330 Cla-Chr4:11421572 7.85E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01994 K03231 - mesc:110601548 1738.78