Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02001 TGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCAAATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGTCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCGAAACTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAAGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACAAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGATTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAAATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCAATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCCAGTCACTGAAGTTCAAGAAGCAGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAAGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTGAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAGCTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCTAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTCCGTGAGAAGGATGATAAATTTTGCCAACCGAAAATAGTCGATATGTTTGCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAAACATGTGATGAACAGTGAAAATTCTGATGATATAGAAGACTTTCAAAAGAAAACTAGTGCTACAAATGTCCCCAAACCAGTTGTTCGAAGTTACAATGTTACAGCCATGAAACATTCAGTTACAAAAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTGTAAGGGTGTAGGATGCGATCCTTCTTCACCATTACATTTCAAAGACATTGATAGAAATGTGGATTACCACGGATGGCTTGAAATGAAGAAACGAAAGTGGAGGAATATTTTGGACAAGAGGAAGAAACAAAGATTGGTAGATTTGAGGACTCCACTTCCTGCTAACGGTGTTCCATTGGAGTTGAATTACGCTATGAACAATAAAGAGGCTCTTGGAATAACAGGCGTTGGTTTGTATTTTAAGAGGCACGAAAAATCTATAACACATTGTCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTATTTTACATCAATTCTAAATTACCCATTACAGAAGGATTTGTTGGTAGGCGTGTTAACAAAACCCTTCCGCATGGAACGCACATCTATAACCTGTATGAGGTTGTGACTGATGAAGGTGAATTTAGGACACAGAGTAATAAACTTGCTGCCCTCCTTGCAGATCCAGAAGTTGAGGGCATCTATGAAAGCAAGGTATCATTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAACATTCAAGACGGGTGGAGTCTGGATGAACTGCAAATGAAAACTACAACAGAATGCAGTTATCTCGAAAAGTTAACCTCTTTCTTCTATGTGTATAATAGCATTTCTGAAGGAGGAGATATCTACATTACCTATTTTCCTGCCACAAAATTCATACTTGTGGTGGTGGTTACTTCTTACCGAAACAAAGACTTGTCATCAAACTTTCTCGAAAGGAAATTTTGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAACCCCCTAAGAGTGGTATAGCTTACAAGGTTGACTATGTTGTAAACATCAAAGAAGCTGAAGTGATTTTGCAAAAGTCAATAACAGAATACAGGAGCACAAACCTTGGACCTACTGTTGCTATAATTGAGTCCCCAAATGTGCAGCTTCTGAAGTCAGTTGTGAAATTTCTTGGTTGGCAACAAAAAGCTGCTGAGATTGGAATGCGACAGTGTGCTAATTCATCCCGATGGTTGAATAATAGAATCTCTCTTGCAAGATATGCCCATGTACCTTTGGGAAATATTGAACCTGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAATTTCGAAGACGTTTGTTTAGTCGATGAGGTTCAACAGCCTATCCGGAATTGCTCTGTATCTTTGTCCCAACTTATGCAGATCCATCATTTGGCTGTGAATGCGCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTGGCTTTGATGAGGCTGAATCATATGCCCCAGCATTTCCTGTCCTGAAACAATTGATTCAAAGATGTCTTGCAGATGTAGCTACATCTGGAAATGTTTATGCTGATGAAATTTTGTTGCATCTGTACCGTTGGATTTGCAGCCCCCAATCAAGGCTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTTGTCATAGACACGGGAAAGTCTGATCTTTCTGCTGCTAAGGCATACTGTGATAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGATACCAGTACAGTTCTGGCACTCCCTGTTATTTATGGATCAGTACAATTATGGTGGAATTTCAGCAAAAGATAATGAAATTACAGATGCTAAATCCCAAGTTAAAATATTGTCCAACTGGAAGATTGCTGAATATCTACCTAAGAAGATTCAGGATTGTTTTATTACGATCATTTCTCAATTTATATACATTCCATGGATATTTGCAACCAAACAAGCTGTTGCAAGAGTGTCGTTGCAGCAGGCCGACACGTGTACCCCATCTTTTGAATCACAAGTGACAGAACATCTCAAAGAGCAGTTGAGTTCTTACTTCAGCAACCATCTGTTTGGGATTGTTGATGATATTTTACATAAACAACCTTCTGATAGTGTCCATAAAGAAGATGCTGCATTGAAATTCATTAATTACGTTTGTGCTGCTTTGGAACTTGACCAAAATAAGAATTTACTGAAGTATATGCACGTGAAAGAGTTTGCACCAGAAGCTCAGTTTTCTTATCCATGCACTTCCTTCATCTTACCCAATGTCTTTTGCAGCTATTGCAATGATTGTAGAGATTTGGACTTGTGCCGTGACTCAGATTTACAAGCACAAGAATGGCGGTGTGGTGTGGCAGAATGTGGACAACCATATAACCAAGAATTGATTGAGAATGCTCTTATTCAAATTGTGATGCAAAGAGAGCGTGCATATCACGTGCAGGATTTGGTTTGTGGTAGGTGCAAACAGGTCAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTTCAATGCAAAGAAGATGCCAAGGAGTTTTTGAGCAGCATGAGGATTCTCTTGGAGGTTGCCACTCGTCAAAAGTTTCAACTTCTTGAAGAGCTCATCTCAACTATCTTGTTAAATGATTAA 5544 40.01 CVGEDIENLEYTPKPEYEGFFKVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTANHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTRFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVNSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDPVTEVQEAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFETKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFCQPKIVDMFASSRGKYSENNGGASSSKHVMNSENSDDIEDFQKKTSATNVPKPVVRSYNVTAMKHSVTKDSQVDSMMQEKCKGVGCDPSSPLHFKDIDRNVDYHGWLEMKKRKWRNILDKRKKQRLVDLRTPLPANGVPLELNYAMNNKEALGITGVGLYFKRHEKSITHCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPITVPRVFYINSKLPITEGFVGRRVNKTLPHGTHIYNLYEVVTDEGEFRTQSNKLAALLADPEVEGIYESKVSLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKLTSFFYVYNSISEGGDIYITYFPATKFILVVVVTSYRNKDLSSNFLERKFCEACQMLSGQSQPPKSGIAYKVDYVVNIKEAEVILQKSITEYRSTNLGPTVAIIESPNVQLLKSVVKFLGWQQKAAEIGMRQCANSSRWLNNRISLARYAHVPLGNIEPDWKIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNFEDVCLVDEVQQPIRNCSVSLSQLMQIHHLAVNALLKSNQVNEMEGGGFDEAESYAPAFPVLKQLIQRCLADVATSGNVYADEILLHLYRWICSPQSRLHDPALHRLLHKAMQKVFALLLAALRKLGATIIFANFSKVVIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIELIPVQFWHSLLFMDQYNYGGISAKDNEITDAKSQVKILSNWKIAEYLPKKIQDCFITIISQFIYIPWIFATKQAVARVSLQQADTCTPSFESQVTEHLKEQLSSYFSNHLFGIVDDILHKQPSDSVHKEDAALKFINYVCAALELDQNKNLLKYMHVKEFAPEAQFSYPCTSFILPNVFCSYCNDCRDLDLCRDSDLQAQEWRCGVAECGQPYNQELIENALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFQCKEDAKEFLSSMRILLEVATRQKFQLLEELISTILLND 1847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37576109 37592983 - ClCG09G020580.1 Cla09g02001 281421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02001 1847 CDD POLBc_epsilon 220 837 - -
Cla09g02001 1847 Gene3D - 3 185 IPR036397 GO:0003676
Cla09g02001 1847 SMART polmehr3 1 558 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla09g02001 1847 Gene3D - 656 840 IPR042087 -
Cla09g02001 1847 Pfam DNA polymerase family B 471 788 IPR006134 GO:0000166|GO:0003677
Cla09g02001 1847 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 1844 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cla09g02001 1847 SUPERFAMILY DNA/RNA polymerases 203 830 IPR043502 -
Cla09g02001 1847 SMART DUF1744_2 1226 1568 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cla09g02001 1847 Pfam DNA polymerase family B, exonuclease domain 1 117 IPR006133 -
Cla09g02001 1847 Pfam Domain of unknown function (DUF1744) 1297 1568 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cla09g02001 1847 Gene3D Palm domain of DNA polymerase 301 652 IPR023211 -
Cla09g02001 1847 SUPERFAMILY Ribonuclease H-like 2 201 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02143 Cla-Chr2:36482824 Cla09g02001 Cla-Chr9:37576109 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02001 K02324 - csv:101208568 3077.73