Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02009 ATGGCTTCCAACACTTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCCGCCGCCGTCCCGATTTCTGGCGTCGCCGTCAATGCATCATCCCGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCTCCCTACCTCGACGGCTCCGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCGGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACGTACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCAGGAGGTGCTTTTGACCCATTAGGCTACTCAAGAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCACTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGA 741 53.17 MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSRDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37651864 37653674 + ClCG09G020650.1 Cla09g02009 281429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02009 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
Cla09g02009 246 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 21 237 - -
Cla09g02009 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 237 IPR001344 GO:0009765|GO:0016020
Cla09g02009 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Cla09g02009 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02009 Cla-Chr9:37651864 Cla06g01586 Cla-Chr6:29404223 4.14E-44 dispersed
Cla11g01861 Cla-Chr11:32115231 Cla09g02009 Cla-Chr9:37651864 8.93E-34 dispersed
Cla09g02009 Cla-Chr9:37651864 Cla04g01190 Cla-Chr4:27061578 1.18E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02009 K08907 - csv:101211428 498.434