Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02010 ATGTCTTCATCGCTCTGTTCCTCAATTCGGCCATTGCCACCGCACTACTGGCGGCGGAAGAACGTCAGATTCTTCCTATTGCTTCAATCAAACAGAGGCATTTGCTTCGCACCTCGCTTCGTTGCTTGCTCGAACAACGACGACTCTGTTGCAATACCCAGACCTACGCCGCTGGCTTTCGATCCTGCGGAGGATCTGTACGGACTTGGCATCGATTTAAAACCTAGGTATGTAGCTTCTAGGGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGTTACCATGTCCAAGTTGCCGAGGTAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGATTGTTCCGTGTGTGATGGAAAGGGTATAGTGACCTGCCACCAATGTCTGGGGGATCGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCATTAAGAATGAAGGAAGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCCCCTCCTCCTGAAGTGGGTTTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCTAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGATCCAATGTTAGAAGCTTGGGCCAAAACCTCTGGATTCCAGATTCATGCTGTCATGACAACTTCAAACTTACAAGTCTTAGTTGCTAAGGAGGGGATACTCATAGGTTCACCTACTCAACTGCGTGCAGGAGTAAAATTTTACTGCAAAAACTGCGGCCGTGAAGGACATCGAAGACACTATTGTCCAGAACTTAAGGAAGCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACCGGAGGACTTGTGAGAAGTCTAGGTCGAATAGTATACCGATGACCGCAACAATTCAGCGCCATTGCGGGATATGCGGTGTGAAGGGCCACAACAGGAGGAACTGTCAGAAGTCCAAGTTGAGCAATCCAACTAACCTACGAATAAATTATGCGCATCGTCGGAGCAGTCGCAATGTGTTGAGGCTGAATTTGATCAGTGAAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCAGCAGAACTGTCCCAATATTGATAGGAAAGGTAACGGTCTGACTACTAGAAGATCATACAGCTGCAAACTATGCCATGAAAAAGGGCATAATATTAGGACATGCCCAAATAGAAATATGAACAATCTACAGAAAAATTCTCCTGTTGCTTTAAACCAATAA 1476 44.78 MSSSLCSSIRPLPPHYWRRKNVRFFLLLQSNRGICFAPRFVACSNNDDSVAIPRPTPLAFDPAEDLYGLGIDLKPRYVASRAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCDGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKDPMLEAWAKTSGFQIHAVMTTSNLQVLVAKEGILIGSPTQLRAGVKFYCKNCGREGHRRHYCPELKEAIDRRFRCRVCGEKGHNRRTCEKSRSNSIPMTATIQRHCGICGVKGHNRRNCQKSKLSNPTNLRINYAHRRSSRNVLRLNLISENSRVRQYHCRICNKNGHSQQNCPNIDRKGNGLTTRRSYSCKLCHEKGHNIRTCPNRNMNNLQKNSPVALNQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37656702 37665322 + ClCG09G020660.2 Cla09g02010 281430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02010 491 SMART c2hcfinal6 317 333 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 SMART c2hcfinal6 343 359 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 SMART c2hcfinal6 459 475 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 SMART c2hcfinal6 428 444 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 Pfam Zinc knuckle 456 475 IPR025829 -
Cla09g02010 491 SUPERFAMILY Retrovirus zinc finger-like domains 421 477 IPR036875 GO:0003676|GO:0008270
Cla09g02010 491 Gene3D - 424 486 - -
Cla09g02010 491 Gene3D - 315 370 - -
Cla09g02010 491 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 313 412 - -
Cla09g02010 491 ProSiteProfiles Zinc finger CCHC-type profile. 343 359 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 15 270 - -
Cla09g02010 491 ProSiteProfiles Zinc finger CCHC-type profile. 429 444 IPR001878 GO:0003676|GO:0008270
Cla09g02010 491 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 420 478 - -
Cla09g02010 491 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 313 412 - -
Cla09g02010 491 SUPERFAMILY Retrovirus zinc finger-like domains 315 361 IPR036875 GO:0003676|GO:0008270
Cla09g02010 491 Coils Coil 164 184 - -
Cla09g02010 491 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 420 478 - -
Cla09g02010 491 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 15 270 - -
Cla09g02010 491 ProSiteProfiles Zinc finger CCHC-type profile. 318 333 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02010 - - csv:101211176 766.918