Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02013 ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCCCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.63 MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37717358 37719856 - ClCG09G020690.1 Cla09g02013 281433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02013 335 CDD CYCLIN 76 168 IPR013763 -
Cla09g02013 335 PANTHER CYCLINS 27 318 IPR039361 -
Cla09g02013 335 SMART cyclin_7 81 169 IPR013763 -
Cla09g02013 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Cla09g02013 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Cla09g02013 335 Gene3D - 49 239 - -
Cla09g02013 335 Gene3D - 59 176 - -
Cla09g02013 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cla09g02013 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Cla09g02013 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cla09g02013 335 Pfam Cyclin, N-terminal domain 45 175 IPR006671 -
Cla09g02013 335 PANTHER CYCLIN-D1-1 27 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02013 K18810 CYCD1_2_4; cyclin D1/2/4, plant - csv:101210686 617.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00791 Cla-Chr4:22971568 Cla09g02013 Cla-Chr9:37717358 3.53E-26 dispersed
Cla05g02105 Cla-Chr5:32667392 Cla09g02013 Cla-Chr9:37717358 4.72E-37 dispersed
Cla05g02516 Cla-Chr5:36524494 Cla09g02013 Cla-Chr9:37717358 1.12E-146 dispersed
Cla09g02013 Cla-Chr9:37717358 Cla10g00969 Cla-Chr10:22769980 8.13E-55 dispersed
Cla09g02013 Cla-Chr9:37717358 Cla01g01805 Cla-Chr1:32976927 5.84E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02205 . 57 348 Core Cell Cycle Gene Families AT3G48750 85.4 3.5e-149 524.6
Cla04g00617 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.9e-96 347.1
Cla11g01852 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.5e-93 338.6
Cla10g01343 . 22 236 Core Cell Cycle Gene Families AT3G48750 52.5 2.4e-57 219.5
Cla04g00617 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.9e-154 540.8
Cla11g01852 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.7e-118 420.2
Cla05g02205 . 57 344 Core Cell Cycle Gene Families AT3G54180 54.2 3.1e-92 335.5
Cla04g00617 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.8e-123 438.3
Cla11g01852 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 3.0e-93 338.6
Cla11g01852 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.4e-156 548.5
Cla04g00617 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.8e-118 420.2
Cla05g02205 . 54 344 Core Cell Cycle Gene Families AT1G76540 53.2 3.8e-93 338.6
Cla11g01852 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.7e-160 560.8
Cla04g00617 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.6e-120 428.3
Cla05g02205 . 54 344 Core Cell Cycle Gene Families AT1G20930 54.8 2.8e-96 349.0
Cla02g02341 . 1 538 Core Cell Cycle Gene Families AT5G10270 70.1 5.7e-208 720.7
Cla10g01343 . 1 586 Core Cell Cycle Gene Families AT5G10270 59.1 2.0e-184 642.5
Cla11g00055 . 177 493 Core Cell Cycle Gene Families AT5G10270 52.1 4.5e-96 349.0
Cla05g01008 . 123 468 Core Cell Cycle Gene Families AT5G10270 50.3 6.0e-93 338.6
Cla04g01180 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.5e-91 334.0
Cla02g01732 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 1.9e-91 333.6
Cla02g01601 CCT,ECH 101 391 Core Cell Cycle Gene Families AT5G10270 52.1 1.9e-86 317.0
Cla02g02341 . 98 537 Core Cell Cycle Gene Families AT5G64960 71.6 3.5e-172 601.7
Cla10g01343 . 65 639 Core Cell Cycle Gene Families AT5G64960 53.9 2.3e-147 519.2
Cla11g00055 . 231 493 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-80 297.7
Cla02g01732 . 838 1100 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-80 297.7
Cla08g00068 . 211 473 Core Cell Cycle Gene Families AT5G64960 53.2 4.1e-80 295.8
Cla02g01601 CCT,ECH 155 391 Core Cell Cycle Gene Families AT5G64960 50.8 1.6e-68 257.3
Cla06g01436 . 8 427 Core Cell Cycle Gene Families AT1G73690 72.4 9.1e-169 590.1
Cla06g01436 . 12 355 Core Cell Cycle Gene Families AT1G66750 74.5 5.2e-152 534.3
Cla06g01436 . 8 428 Core Cell Cycle Gene Families AT1G18040 72.9 1.2e-170 596.3
Cla04g00115 . 32 491 Core Cell Cycle Gene Families AT5G63610 70.5 5.5e-181 630.9
Cla11g00214 CCT,ECH 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 2.3e-174 609.0
Cla08g00616 . 5 520 Core Cell Cycle Gene Families AT1G44110 52.2 4.2e-133 471.9
Cla09g00216 . 225 501 Core Cell Cycle Gene Families AT1G44110 54.5 1.7e-86 317.0
Cla05g01761 . 254 515 Core Cell Cycle Gene Families AT1G44110 55.0 2.6e-82 303.1
Cla05g02086 CCT,ECH 310 599 Core Cell Cycle Gene Families AT1G44110 50.7 4.1e-80 295.8
Cla08g01290 . 262 530 Core Cell Cycle Gene Families AT1G44110 52.0 1.7e-73 273.9
Cla08g00616 . 191 515 Core Cell Cycle Gene Families AT1G77390 56.7 2.1e-102 369.8
Cla09g00216 . 224 503 Core Cell Cycle Gene Families AT1G77390 50.7 1.5e-76 283.9
Cla05g01761 . 254 515 Core Cell Cycle Gene Families AT1G77390 52.7 5.5e-74 275.4
Cla05g01761 . 64 515 Core Cell Cycle Gene Families AT5G25380 53.5 7.1e-114 407.9
Cla08g01290 . 95 542 Core Cell Cycle Gene Families AT5G25380 50.8 1.5e-100 363.6
Cla09g00216 . 223 486 Core Cell Cycle Gene Families AT5G25380 63.6 1.4e-93 340.5
Cla08g00616 . 253 520 Core Cell Cycle Gene Families AT5G25380 55.6 2.0e-79 293.5
Cla05g02086 CCT,ECH 314 592 Core Cell Cycle Gene Families AT5G25380 50.2 8.0e-73 271.6
Cla05g01761 . 92 470 Core Cell Cycle Gene Families AT5G11300 53.0 1.0e-93 340.9
Cla08g00616 . 244 473 Core Cell Cycle Gene Families AT5G11300 55.7 1.9e-68 256.9
Cla05g02086 CCT,ECH 310 536 Core Cell Cycle Gene Families AT5G11300 52.9 2.1e-59 226.9
Cla09g00216 . 189 493 Core Cell Cycle Gene Families AT1G15570 63.2 1.7e-110 396.7
Cla08g00616 . 225 520 Core Cell Cycle Gene Families AT1G15570 52.5 2.6e-79 293.1
Cla09g00216 . 4 486 Core Cell Cycle Gene Families AT1G80370 51.1 4.3e-114 408.7
Cla08g00616 . 254 523 Core Cell Cycle Gene Families AT1G80370 56.7 2.4e-80 296.6
Cla05g02086 CCT,ECH 214 602 Core Cell Cycle Gene Families AT5G43080 55.5 3.8e-110 395.2
Cla08g00616 . 255 520 Core Cell Cycle Gene Families AT5G43080 52.3 3.6e-76 282.3
Cla05g01761 . 256 515 Core Cell Cycle Gene Families AT5G43080 53.5 8.8e-75 277.7
Cla09g00216 . 226 486 Core Cell Cycle Gene Families AT5G43080 51.0 7.0e-72 268.1
Cla05g02086 CCT,ECH 214 602 Core Cell Cycle Gene Families AT1G47210 52.3 4.0e-110 395.2
Cla08g01600 CCT,ECH 1 434 Core Cell Cycle Gene Families AT1G47210 50.2 9.9e-109 390.6
Cla09g00216 . 226 486 Core Cell Cycle Gene Families AT1G47210 51.7 7.9e-74 274.6
Cla05g01761 . 256 530 Core Cell Cycle Gene Families AT1G47210 50.7 5.1e-73 271.9
Cla05g02086 CCT,ECH 310 600 Core Cell Cycle Gene Families AT1G47220 57.0 2.5e-92 335.9
Cla05g01761 . 256 515 Core Cell Cycle Gene Families AT1G47220 51.9 3.6e-70 262.3
Cla05g02086 CCT,ECH 214 602 Core Cell Cycle Gene Families AT1G47230 54.9 6.6e-113 404.4
Cla08g00616 . 256 520 Core Cell Cycle Gene Families AT1G47230 50.7 4.3e-72 268.9
Cla09g00216 . 228 486 Core Cell Cycle Gene Families AT1G47230 51.9 1.4e-70 263.8
Cla05g01761 . 257 515 Core Cell Cycle Gene Families AT1G47230 51.5 1.3e-68 257.3
Cla04g00589 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.6e-116 414.1
Cla04g00589 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 7.1e-82 301.2
Cla02g02191 . 322 512 Core Cell Cycle Gene Families AT5G06150 64.1 4.1e-61 232.3
Cla01g02033 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.1e-45 181.0
Cla04g00589 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 4.0e-105 378.6
Cla01g02033 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 7.2e-62 235.0
Cla01g02033 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.9e-128 454.9
Cla11g01821 . 167 568 Core Cell Cycle Gene Families AT2G17620 53.2 2.1e-107 386.3
Cla01g02033 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.2e-103 372.9
Cla11g01821 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 1.4e-89 327.0
Cla11g01821 . 131 566 Core Cell Cycle Gene Families AT1G20610 64.2 1.2e-145 513.5
Cla01g02033 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 3.1e-122 435.6
Cla11g01821 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.8 1.8e-104 376.3
Cla01g02033 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 7.2e-82 301.2
Cla02g02191 . 353 512 Core Cell Cycle Gene Families AT1G76310 53.7 4.4e-39 159.1
Cla09g02013 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.3e-111 398.7
Cla05g02516 . 1 363 Core Cell Cycle Gene Families AT1G70210 57.1 1.3e-99 360.1
Cla01g01805 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 4.1e-83 305.4
Cla05g01093 . 14 336 Core Cell Cycle Gene Families AT4G34160 52.4 6.3e-79 291.6
Cla08g01590 CCT,ECH 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 9.5e-67 251.1
Cla02g00627 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.7e-61 233.0
Cla01g01805 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cla08g01149 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.6e-61 231.5
Cla01g01805 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.6e-56 214.2
Cla08g01149 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.6e-51 197.2
Cla01g01620 . 45 331 Core Cell Cycle Gene Families AT5G27620 58.6 1.9e-86 316.2
Cla01g01374 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.7e-43 171.8
Cla02g02112 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.1e-42 169.1
Cla01g01374 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 4.9e-40 160.2
Cla02g02112 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.1e-39 157.1
Cla05g02700 . 244 1262 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.7
Cla09g00570 . 2 497 Core Cell Cycle Gene Families AT1G02970 58.8 1.5e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001224 3 2 3 3 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 1 4 4 1 77