Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g02013 | ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCCCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA | 1008 | 46.63 | MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE | 335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37717358 | 37719856 | - | ClCG09G020690.1 | Cla09g02013 | 281433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g02013 | 335 | CDD | CYCLIN | 76 | 168 | IPR013763 | - | |
| Cla09g02013 | 335 | PANTHER | CYCLINS | 27 | 318 | IPR039361 | - | |
| Cla09g02013 | 335 | SMART | cyclin_7 | 81 | 169 | IPR013763 | - | |
| Cla09g02013 | 335 | Pfam | Cyclin, C-terminal domain | 178 | 279 | IPR004367 | - | |
| Cla09g02013 | 335 | ProSitePatterns | Cyclins signature. | 76 | 107 | IPR006671 | - | |
| Cla09g02013 | 335 | Gene3D | - | 49 | 239 | - | - | |
| Cla09g02013 | 335 | Gene3D | - | 59 | 176 | - | - | |
| Cla09g02013 | 335 | SMART | Cyclin_C_2 | 178 | 311 | IPR004367 | - | |
| Cla09g02013 | 335 | SUPERFAMILY | Cyclin-like | 160 | 277 | IPR036915 | - | |
| Cla09g02013 | 335 | SUPERFAMILY | Cyclin-like | 39 | 175 | IPR036915 | - | |
| Cla09g02013 | 335 | Pfam | Cyclin, N-terminal domain | 45 | 175 | IPR006671 | - | |
| Cla09g02013 | 335 | PANTHER | CYCLIN-D1-1 | 27 | 318 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00791 | Cla-Chr4:22971568 | Cla09g02013 | Cla-Chr9:37717358 | 3.53E-26 | dispersed | |
| Cla05g02105 | Cla-Chr5:32667392 | Cla09g02013 | Cla-Chr9:37717358 | 4.72E-37 | dispersed | |
| Cla05g02516 | Cla-Chr5:36524494 | Cla09g02013 | Cla-Chr9:37717358 | 1.12E-146 | dispersed | |
| Cla09g02013 | Cla-Chr9:37717358 | Cla10g00969 | Cla-Chr10:22769980 | 8.13E-55 | dispersed | |
| Cla09g02013 | Cla-Chr9:37717358 | Cla01g01805 | Cla-Chr1:32976927 | 5.84E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g02013 | K18810 | - | csv:101210686 | 617.846 |