Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02029 ATGAAGGTTAATGAATCTTATGAAGCAGTGAAAAATCAGAGTAGGAAAAAGAAAAAGCAGAACTCAGGCAGCGCACCACACCCAAATTCAAAAACTCTTCCTCACGCAATCTCTAAATCAAAGAAGCTTCGTGGTAACGCCCTTCTGAATCGGCGTCTCTCTCTCTCCCTCTCTCTGCTGCCTGCTGCAGAAGCGCTTTTTACTATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGGGTTCCAGCTACATCGGAGAAAACTTCGTTGCAAGTTAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGTTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGTGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTCGATGACGCGGTTGAATTTCTAGAGCTATGTGAAAGAGACAAGGCTCGGGTTCTGGTGCACTGCATGTCAGGAAAAAATAGGTCTCCAGCTATTGTTATAGCGTTTTTGATGAAATGTAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGACTTAACTGAATCTGTCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATTAGCAGAAAACTCCCTCCCAACCCTGCCAATCTTCCCTCCTGTTGGTCCGCCGTCTTTTAGCTTTGGCTTCCCAAAGACTGGCGACCCAGTTCCTACAACTCCATTCAACAGCATTGGTGCAACATCGATCTTTTCCCGCCCGACCATGGACGTACCTTCCCACGAGTTTACATTCGGTGCTGGCCAAACTCAAAACGGTTTCTCCGCTAGCCCCTTTGGCACTAATCCACGGAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 1023 45.94 MKVNESYEAVKNQSRKKKKQNSGSAPHPNSKTLPHAISKSKKLRGNALLNRRLSLSLSLLPAAEALFTMRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLELCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTESVYQQLQEYEQKVFGLAENSLPTLPIFPPVGPPSFSFGFPKTGDPVPTTPFNSIGATSIFSRPTMDVPSHEFTFGAGQTQNGFSASPFGTNPRNSTSSNIQMDSA 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37875477 37878862 + ClCG09G020850.1 Cla09g02029 281449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02029 340 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 69 339 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cla09g02029 340 MobiDBLite consensus disorder prediction 306 340 - -
Cla09g02029 340 MobiDBLite consensus disorder prediction 1 37 - -
Cla09g02029 340 Gene3D Protein tyrosine phosphatase superfamily 98 250 IPR029021 -
Cla09g02029 340 CDD DSP_plant_IBR5-like 115 244 - -
Cla09g02029 340 Pfam Dual specificity phosphatase, catalytic domain 123 247 IPR000340 GO:0008138|GO:0016311
Cla09g02029 340 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 239 IPR000387 GO:0016311|GO:0016791
Cla09g02029 340 MobiDBLite consensus disorder prediction 308 340 - -
Cla09g02029 340 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 69 339 - -
Cla09g02029 340 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 250 IPR020422 GO:0006470|GO:0008138
Cla09g02029 340 ProSitePatterns Tyrosine specific protein phosphatases active site. 192 202 IPR016130 GO:0016311|GO:0016791
Cla09g02029 340 SMART dsp_5 114 247 IPR020422 GO:0006470|GO:0008138
Cla09g02029 340 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 115 249 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00286 Cla-Chr7:3145477 Cla09g02029 Cla-Chr9:37875477 1.77E-13 dispersed
Cla09g02029 Cla-Chr9:37875477 Cla11g00178 Cla-Chr11:2123554 6.75E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02029 K04459 - csv:101211000 518.464