Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02037 ATGGTTACAGACCAAGAGCTTTCTCAAGCTATACAATGTCTTCTTCGCGACTCTGCTTCTGCTACAAACCCTAACCCTTTTTCTTCTTTAAACGCTGTCGTTCAGGAGTTGCAGACCAAGCTTGGCCTTGACCTCTCTCATAAAGTCGATTTCATCCATGCCCAGATCCAATTTATCCTTCGTTCTCACCCTCAACAACCCCATCACCACCACAACCACCACCAGCACCACCATCATCATCAACAGCAACAACAACAGCTACCCTCTTCGCAGAAAGACCTCTTTGCCCTTCATCAGAGCCCTAATTTCCAATCTGCGCCTTCCCCCACTTCCTCTGCTTTTCATACCTTCACTGCTCAGCCTCCGCCGGTTAAGGCGGAATCCGCCGTCTCTCCCACTGTTCCGGGTTCTGACCCGCCAAAGGAAAGTGAAGTTGATTTCATTCTGTTTTCTTGCAATTCTACTGAATTGGTGGAAGGGCTTCTCGATTTTTACTTCAATACTCCTGCTTCGTTTTCCTCTGGGTTCAGAAGGTTACTCAGGATTTCTGGTCACAAATGTGACTTTCTGCTTTTGTCATCGCTTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCGGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCCATTGTTGGCCAACCAGAATTGCCAAGAACTGAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATTTGCAATGACGAGTTGCGGTTGGTATTTGAAACAGACTGCACCGACATGTTCAAAATGAATAAGTTGCTAGCCAAACACATCATTCCTCTTGAACCTACAAAACCATCAAGTTCTAAGAAGGCACGAGTGGAGAATGAATCTACAGTTGGTGTTAAAGGTGCAGAACCCAGTATTTGTCCTTCTGTGATTATATCTGAAGCTTTAGCAAGTTTTTTTGGTGTCGATGGAAGGGAGATGCTCCAATCAGAGGTTCTGAGACGCATATGGGAATACATAAAAGTGAATCATCTTGAGGACCCTTTGAACCCGATGGCAGTTTTGTGCGATGTAAAACTCCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCATTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCATGA 1188 44.87 MVTDQELSQAIQCLLRDSASATNPNPFSSLNAVVQELQTKLGLDLSHKVDFIHAQIQFILRSHPQQPHHHHNHHQHHHHHQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQPPPVKAESAVSPTVPGSDPPKESEVDFILFSCNSTELVEGLLDFYFNTPASFSSGFRRLLRISGHKCDFLLLSSLTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESTVGVKGAEPSICPSVIISEALASFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDVKLRELFGCESISALGIPEVLGRHHIFRRS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37951455 37955943 + ClCG09G020920.1 Cla09g02037 281457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02037 395 CDD SWIB-MDM2_like 213 283 - -
Cla09g02037 395 ProSiteProfiles SWIB/MDM2 domain profile. 313 392 IPR003121 -
Cla09g02037 395 MobiDBLite consensus disorder prediction 64 139 - -
Cla09g02037 395 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 198 391 - -
Cla09g02037 395 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 89 - -
Cla09g02037 395 SUPERFAMILY SWIB/MDM2 domain 312 390 IPR036885 -
Cla09g02037 395 PANTHER - 1 89 - -
Cla09g02037 395 CDD SWIB-MDM2_like 318 389 - -
Cla09g02037 395 Gene3D SWIB/MDM2 domain 204 294 IPR036885 -
Cla09g02037 395 Gene3D SWIB/MDM2 domain 313 394 IPR036885 -
Cla09g02037 395 Pfam SWIB/MDM2 domain 319 389 IPR003121 -
Cla09g02037 395 Pfam SWIB/MDM2 domain 213 283 IPR003121 -
Cla09g02037 395 MobiDBLite consensus disorder prediction 64 81 - -
Cla09g02037 395 ProSiteProfiles SWIB/MDM2 domain profile. 208 285 IPR003121 -
Cla09g02037 395 SUPERFAMILY SWIB/MDM2 domain 202 288 IPR036885 -
Cla09g02037 395 PANTHER - 198 391 - -
Cla09g02037 395 MobiDBLite consensus disorder prediction 82 118 - -
Cla09g02037 395 SMART swib_2 209 288 IPR019835 -
Cla09g02037 395 SMART swib_2 314 395 IPR019835 -
Cla09g02037 395 Pfam DEK C terminal domain 2 59 IPR014876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02037 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 585.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01307 Cla-Chr2:27189534 Cla09g02037 Cla-Chr9:37951455 4.92E-09 dispersed
Cla06g00053 Cla-Chr6:559180 Cla09g02037 Cla-Chr9:37951455 2.16E-10 dispersed
Cla09g01583 Cla-Chr9:31599162 Cla09g02037 Cla-Chr9:37951455 5.33E-06 dispersed
Cla09g02037 Cla-Chr9:37951455 Cla05g00256 Cla-Chr5:2343653 3.18E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61785 PF02201 SWIB 1.30E-17 No_clan Cla TR