Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02040 ATGGGAGTTTTCGAAACGGTGAAAAACATCGGCAGCGATCACGCCCCGGTCGTCCCCTTGACGTTGTTCGTCGCCGTTCTCTGTTTTTCTTTGGTTATTGGCCACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATCACCGCCATTATCATTGGAGTTGTTACTGGAACGATCATATTGGTCTGTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATGTATCTTCTTCCACCAATAATCTTCAATGCGGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCATAATTTCTTGACCATCATGCTGTTTGGTGTGGTTGGTGTTTTCATATCTGCACTTATTATAACGGCTGATTTTAATTCATGCGAAATGGTTCTTTATGCATTGATTAGGCAGCCAGTGGCTGTTTCCGAGAATGGGCTTTCATGGTCTGTCGGCGCGGGACTATCTATAGGCGCTATCTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAACGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAGGCTTAACAACAAGACAGCCCTTCATCTTTTGGGAGATTTTTGTTACTTATTTTCGACTAGCACTGTCCTTGGAGTGACTACTGGGCTTCTAACAGCATATATCCTTAAAACCTTATATTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTATCTTACATGCTAGCAGAGGCCATATGCTGGATCCTTCCACCTCCAGGATTCTCACAATTAAATTCTGACGGTGCATGGAGTTCCTCCCCATCTTCAACTGGTCTGGGATTGGTAATCCAAGATGAATTCGGATCTCTTTCTGCTATCTCTGCTATTCATCTGCCAATTGATTATGTGGCTCCGCTGGCTGAATTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGAATTATCATGTCGCACTATGCATGGCATAACGTGACTGATAGTTCAAGAATTACCACCAGGCAACATCAATTCTTGTGGAAGTTGCTTGGTACATATACTGCCATAGTTTTCTTGATTTTGCTTGGTCGTGCTGCCTTTGTATTTCCCCTGTCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCATCGTCGCCTTCTATGATCTCATTTAAAGAACAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCTATTGCTCTGGCTTTCAAACAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACCACAGTGGTATTTGGGTTTCTAACAAAGCCACTCATAAGATGTCTGCTTCCTCCCAACCAAGCAAGTAGCAGCGCAAGCAACTCCAGACCAAAGTTCACTGAAGAGGACATAACTCTCCCTTTACTCTCCATGGAAGAGTCTGCTGCAACGAATGTCCTCCGGGCCAAGGATAGTTTGTCAATGCTAATAGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGGCCTCGCCACAACCAACAACCTGGTGGTTCTGGTTGTTAG 1710 43.16 MGVFETVKNIGSDHAPVVPLTLFVAVLCFSLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFMYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISALIITADFNSCEMVLYALIRQPVAVSENGLSWSVGAGLSIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNNKTALHLLGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAEAICWILPPPGFSQLNSDGAWSSSPSSTGLGLVIQDEFGSLSAISAIHLPIDYVAPLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRQHQFLWKLLGTYTAIVFLILLGRAAFVFPLSAISNYFIKREDRSSSPSMISFKEQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMITNTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSASNSRPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDSYMRPIFGGPRHNQQPGGSGC 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37969153 37977126 - ClCG09G020950.2 Cla09g02040 281460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02040 569 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g02040 569 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g02040 569 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g02040 569 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 370 562 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g02040 569 Pfam Sodium/hydrogen exchanger family 25 277 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla09g02040 569 Pfam Sodium/hydrogen exchanger family 331 482 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 9 276 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 9 276 - -
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 327 368 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 327 368 - -
Cla09g02040 569 PANTHER SODIUM/HYDROGEN EXCHANGER 370 562 - -
Cla09g02040 569 Gene3D - 155 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00597 Cla-Chr9:5532619 Cla09g02040 Cla-Chr9:37969153 1.82E-92 dispersed
Cla09g02040 Cla-Chr9:37969153 Cla05g01100 Cla-Chr5:11393629 1.39E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02040 - - csv:101217775 746.117