Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02041 ATGAAGCTTTCTTCCTCCGATCAACAGCTGTGGATTTGCCGGAGGAGGCGCCCTGAAGTTCGCCTGAGCTCCGATGAGTTGCTGGAAGAGTTTTCCGGCAATGTGTTCTCTCCTTCTTCTGTTTCCTCTGTTTCTTCACTCGTCCCTGGTGCTGGAAATGCTCCATTTGTTGTGGCTCGCGGTGGATTTTCAGGGCTTTTTCCTGATTCATGTGGAGTTGCCTACAATTTTGCAGTTATGGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACCAAAGATGGAGTTGGAATTTGTCTTCCGGATCTGAGGCTTGACAATGCTACTGATGCTCCGACTATTCTAGGGACAAACCGCAGCAATGTCTATCTTGTTAATGGTGTCCGTACTAAGGGATTGTTTACGGTCGATTTCAATTTCAAAGAACTGGAAAATGTTTCTCTTGTTCAAGGAATCTATTCTCGAACTAATAAGTTCGATGGCAATGAGTTTGTTATTCTCACTCCTGAAGATGTGGTTAATCAGTTCAAGCCTCCAGGATTTTGGCTAAATATTCAGCATGATGTTTTCTTCACGCAACATAACGTGAGCATGAGGAACTTTGTACTTTCTGTATCCAGAAGCATCATTGTTAACTATATATCATCACCAGAGGTCGGATTTCTCAGAAGTATAGCTGCAAGGATTCCCCGCACAACAAAGTTGATCCTTCGGGTCTTAGGACCCACTGATACTGAGGTTACCACCAACCAGACATATGCCTCTCTCTTAGGAAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTACCTAAGACTTATATATGGCCCATTAGTAACGATGGTTACATACAACAACCTCAAACCTCTCTTGTTTCTGATGCTCACAAAGCACAGCTGGAAATTTTTGCATCAGACTTCTTTAGTGACCTTCCATTAAGCTACAATTACAGTTACGATCCCGTTACTGAATACCTGTCTTACTTTGACAATGGTAAATTTTCAGTTGATGGTGTGCTCACTGATTTCCCCATTTCTCCATCGTCAGCTATTGACTGTTTTGCTCATTTGGATAAGAACGCCAAAAGTCAAGCCAAGCCTTTGGTTATTTCAAAATTTGGAGCTAGTGGAGACTTTCCTGCTTGCACAGATTTGGCATACTCGAATGCCATTTCAGATGGTGTTGAAGTACTCGACTGTCCTGTTCAAATAACCAAAGACGGGATACCATTTTGCATGAGCTCAATTAATCTCATCGACAGCACAACAATATCTCAATCACCATTCATTAACCGTTCAAAAAAAATTCCCGAAATTAGTCCTAACGAAGGAATTTTTGCTTTTGACTTAACATGGGAAGAGATTCAAGGCCTAACCCCGTCAATATTGAACCCTTATTCGAAGTTCACGTTGTTCCGAAATCCAAGGTTCAGAAACAGTGGAAAATTCATAACACTACCTGATTTCTTGGCCTTCGCAAAGAATGCAAGCACTCTTTCTGGTGTCTTGATCCATATTGAGCATGCAGCCTACCTTGCTAAGGATCAGGGTTTAAGTGTAACTGATGCGGTCTTTGGTTCCTTAAGCAAAGCTGGTTATGATAATCAGACAGCCCTTAAAGTATTGATTCAATCTCCAGATAGTGCTGTTCTAAAAAAATTTAAACAGGAAAATAACAGTTACGAGCTTGTTTATCAAGTTGACATGTCAATTGGGGATGTGCTCAATACAACTGTTGTGGACATAAAGAGTTTTGCCAACTCTGTGACTATCAGCAAGCCCTCTGTCTTCCCTGAAAATCAGCTATTTCTCACGGGATCTACAGATGTTGTGAAGAAGCTGCAAGCACTTAAGCTCTCTGTATATGTGGAAACCTTCGACAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCCGATGCAACTGTAGAGATCAACTCATATGTTTTGGGAGCCAACATTGATGGAGTCATCACCACTTTCCCAAAGACATCTGCTAGATATAAAAAGAACCGATGTTTATCAATGAAAGAAACACCTAATTACATGAGCCCTGTCCAGCCTGGTAGCTTGTTGCAACTTGTTACTCCAGACTACCTGCCTCCGAAGACAGCTCCGAGCCCGGTTTTGAATGACAAAGACGTAGCTGAGCCACCATTGCCTCCGGTTTCGGCCAAAGCCCCAGCACCTGCTGTCGACAGTGGCCCTACAGCAGCATCTCCAACTTCTAAACCCAATGGACAACCTAAGCTTGGAGCTGGAGCAGGCTTCTTGTTCTTGAACCTTGCCATACTTTCCATTGCTCTTCTTCCATTCTGA 2334 42.5 MKLSSSDQQLWICRRRRPEVRLSSDELLEEFSGNVFSPSSVSSVSSLVPGAGNAPFVVARGGFSGLFPDSCGVAYNFAVMVSVPDVILWCDVQLTKDGVGICLPDLRLDNATDAPTILGTNRSNVYLVNGVRTKGLFTVDFNFKELENVSLVQGIYSRTNKFDGNEFVILTPEDVVNQFKPPGFWLNIQHDVFFTQHNVSMRNFVLSVSRSIIVNYISSPEVGFLRSIAARIPRTTKLILRVLGPTDTEVTTNQTYASLLGNLTFIKTFASGILVPKTYIWPISNDGYIQQPQTSLVSDAHKAQLEIFASDFFSDLPLSYNYSYDPVTEYLSYFDNGKFSVDGVLTDFPISPSSAIDCFAHLDKNAKSQAKPLVISKFGASGDFPACTDLAYSNAISDGVEVLDCPVQITKDGIPFCMSSINLIDSTTISQSPFINRSKKIPEISPNEGIFAFDLTWEEIQGLTPSILNPYSKFTLFRNPRFRNSGKFITLPDFLAFAKNASTLSGVLIHIEHAAYLAKDQGLSVTDAVFGSLSKAGYDNQTALKVLIQSPDSAVLKKFKQENNSYELVYQVDMSIGDVLNTTVVDIKSFANSVTISKPSVFPENQLFLTGSTDVVKKLQALKLSVYVETFDNEFVSQAWDFFSDATVEINSYVLGANIDGVITTFPKTSARYKKNRCLSMKETPNYMSPVQPGSLLQLVTPDYLPPKTAPSPVLNDKDVAEPPLPPVSAKAPAPAVDSGPTAASPTSKPNGQPKLGAGAGFLFLNLAILSIALLPF 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37989207 37999290 + ClCG09G020970.2 Cla09g02041 281461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02041 777 ProSiteProfiles GP-PDE domain profile. 372 674 IPR030395 GO:0006629|GO:0008081
Cla09g02041 777 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 51 751 - -
Cla09g02041 777 SUPERFAMILY PLC-like phosphodiesterases 54 350 IPR017946 GO:0006629|GO:0008081
Cla09g02041 777 Gene3D Phosphatidylinositol (PI) phosphodiesterase 53 352 IPR017946 GO:0006629|GO:0008081
Cla09g02041 777 Gene3D Phosphatidylinositol (PI) phosphodiesterase 370 673 IPR017946 GO:0006629|GO:0008081
Cla09g02041 777 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 51 751 - -
Cla09g02041 777 Pfam Glycerophosphoryl diester phosphodiesterase family 379 668 IPR030395 GO:0006629|GO:0008081
Cla09g02041 777 Pfam Glycerophosphoryl diester phosphodiesterase family 90 309 IPR030395 GO:0006629|GO:0008081
Cla09g02041 777 MobiDBLite consensus disorder prediction 711 752 - -
Cla09g02041 777 CDD GDPD_SHV3_repeat_2 372 673 - -
Cla09g02041 777 CDD GDPD_SHV3_repeat_1 55 355 - -
Cla09g02041 777 ProSiteProfiles GP-PDE domain profile. 55 356 IPR030395 GO:0006629|GO:0008081
Cla09g02041 777 SUPERFAMILY PLC-like phosphodiesterases 371 673 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01884 Cla-Chr1:33642313 Cla09g02041 Cla-Chr9:37989207 0 dispersed
Cla09g02041 Cla-Chr9:37989207 Cla04g01152 Cla-Chr4:26727140 2.41E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02041 - - bhj:120086180 1268.06