Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02042 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTAGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACATATATGCTGCAGATTTCATTTCTAAACCTGTTGTTAGAAAATGCTGTTCTAAAAACAGAAATGCTAGTGGAAGGAACTGTGACACATGAAGATTTTGAAGGGCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGGACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCTGATCCCGTCGTCATGGAACGCATTCGTGTACATTCTTGAAGGAGAAGGCGTCTTCGGCAGCTCAAAAGCGACATCAACAACAGCACATAACCTACTTCTTCTCGGTTTCGGGGACGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGAATTTCTCTTGGGTTCTAA 966 43.89 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQISFLNLLLENAVLKTEMLVEGTVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQLIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38008530 38012224 + ClCG09G020980.2 Cla09g02042 281462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02042 321 PIRSF Pirin 12 79 IPR012093 -
Cla09g02042 321 PIRSF Pirin 95 312 IPR012093 -
Cla09g02042 321 Pfam Pirin 34 78 IPR003829 -
Cla09g02042 321 Pfam Pirin 95 146 IPR003829 -
Cla09g02042 321 PANTHER PIRIN-RELATED 3 317 IPR012093 -
Cla09g02042 321 Gene3D Jelly Rolls 12 277 IPR014710 -
Cla09g02042 321 Pfam Pirin C-terminal cupin domain 199 303 IPR008778 -
Cla09g02042 321 PANTHER OS09G0484800 PROTEIN 3 317 - -
Cla09g02042 321 SUPERFAMILY RmlC-like cupins 14 313 IPR011051 -
Cla09g02042 321 CDD cupin_pirin_C 196 272 - -
Cla09g02042 321 CDD cupin_pirin_N 33 148 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g02042 Cla10g00439 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01592 Cla-Chr7:33219779 Cla09g02042 Cla-Chr9:38008530 1.02E-122 dispersed
Cla09g02042 Cla-Chr9:38008530 Cla10g00439 Cla-Chr10:5909581 7.24E-153 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02042 K06911 - csv:101216351 580.096