Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02045 ATGAGTTTCTCGATGATGGGTTCTTCGGGATGTGAAATTTTTGTGCGAAGTTCTCACCAGAAGACTGTGAAGTTCCAACTGTTCCATGAAAGAGAGAAGAAGGTGGTGTTCAAGTTCTCCAAGTCTCGGTGTAACGCTGCCAGAGCTCTACTTAGCAAGCATGAAGCGATTGAGTTTGTGGAGAGGACAAGTCCCATCGAGGCATCAGTTATGCATCTTGGATATCTCAGTTGTATTTTTATCTTTTATGCTAGTGAGATATGGCAGTTTATATTTGATTCTACCTTTCTTAATGAAGTCAGAACAGAGATAGCAAAATGCTATGAATTAATAAACAGACTAGGTAAAGGAGTTGTTTATCTGGGATCTTCAAGAATGGGACCTGATCATGCTCATTACAAACAAGCGTTCGAATTGAGTAGAGAGATTTCAGAACTTTTGGATTGCACTACTTGGTCAGGTGTTGGTCCGGGGCTTATGGATGCAGTTACAAAAGGTGCTTTGCAGGCAGGTAACCCTGTAGGCGGATTCAAAATCGGTAGAGAATCTGGTGAATGGACATCCTCAAAGTTTCATCCATACCTACCTACAGAAACTTATTTTACTTGCAGGTTTTTCTCAGCAAGAAAGCACGGGCTTGTTGATGCTGCAGTTAGAAGCTGCAGTTCTGATAGGACTGCTTTTGTTACTCTCCCCGGCGGCATTGGTACTTTCGATGAGGTGTTTGAGATTCTAGCTTTGATTCAGCTAAGGAGAATAGGGTCAGATTTTCCAGTTCCCTTCCTGTTGATGAACTACGACTCTTTCTACTCGAGGTTACTCGAATTTTTTAACGATTGTGAAAACTGGGGTACATTGGCGAAGGGAGAGGTCGATTCGCTTTGGAAGGTCTGTGACAATAACGCCGAAGCCGTGGCATATTTGGCCAGTTTTTACAATTTATGTCGTCATGATAGAGAGAAGAATGAAGTTGGATTGGAAAGCACACATTGA 993 42.3 MSFSMMGSSGCEIFVRSSHQKTVKFQLFHEREKKVVFKFSKSRCNAARALLSKHEAIEFVERTSPIEASVMHLGYLSCIFIFYASEIWQFIFDSTFLNEVRTEIAKCYELINRLGKGVVYLGSSRMGPDHAHYKQAFELSREISELLDCTTWSGVGPGLMDAVTKGALQAGNPVGGFKIGRESGEWTSSKFHPYLPTETYFTCRFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDEVFEILALIQLRRIGSDFPVPFLLMNYDSFYSRLLEFFNDCENWGTLAKGEVDSLWKVCDNNAEAVAYLASFYNLCRHDREKNEVGLESTH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38023763 38026669 + ClCG09G021010.1 Cla09g02045 281465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02045 330 Gene3D - 97 327 - -
Cla09g02045 330 PANTHER EXPRESSED PROTEIN 1 322 - -
Cla09g02045 330 PANTHER EXPRESSED PROTEIN 1 322 - -
Cla09g02045 330 SUPERFAMILY MCP/YpsA-like 100 308 - -
Cla09g02045 330 Pfam Possible lysine decarboxylase 160 307 IPR031100 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02045 - - - csv:101207783 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02045 Cla-Chr9:38023763 Cla08g01434 Cla-Chr8:27178207 2.19E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g602 Blo03g00529 . Bda07g00392 . . . . . . . . Cma09g00983 . Car09g00894 Sed04g3681 Cpe06g00794 . Bhi09g01725 Tan01g3151 Cmetu01g1653 . . Mch11g1237 . . . . . . . . . Cone9ag0035 . . Lsi02g01861 Csa07g00980 . . . . . . Bpe11g00570 . . Bma14g00309 . . Cmo09g00985 . . . . . . . . . . . . . Cla09g02045 Cam09g2133 Cec09g2198 . . . . . . Chy01g01078 Cme01g00966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010339 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32