Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02066 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTGTTGGAAAAAGGTTAATAGATATCCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCGGCCTAATACTGAGCAATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCACAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTTGAGAAGTTAGATTTTATCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGACGTCTGTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATCGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTCGATGATGACGGGGTCGTTGGAACACATCCATCCATTTCTGATGAGACCTCTAACACGTTCGATGATTCCAAGGCTGCAGAATTTGTCTTATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTACACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCTTAA 1119 41.11 MGSQEARQPLLPTSSNTVGKRLIDIPRSKRRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGTHPSISDETSNTFDDSKAAEFVLYKLKEMGKITEDDITPVLKEFENLDVDQSGTLSKSDITLAQLS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38236836 38239858 + ClCG09G021230.1 Cla09g02066 281486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02066 372 Gene3D - 178 282 - -
Cla09g02066 372 SUPERFAMILY Voltage-gated potassium channels 180 292 - -
Cla09g02066 372 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 28 366 - -
Cla09g02066 372 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla09g02066 372 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla09g02066 372 MobiDBLite consensus disorder prediction 29 56 - -
Cla09g02066 372 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 28 366 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla09g02066 372 SUPERFAMILY Voltage-gated potassium channels 71 179 - -
Cla09g02066 372 Pfam Ion channel 80 160 IPR013099 -
Cla09g02066 372 Pfam Ion channel 200 271 IPR013099 -
Cla09g02066 372 ProSitePatterns EF-hand calcium-binding domain. 354 366 IPR018247 -
Cla09g02066 372 Gene3D - 71 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01082 Cla-Chr1:17176131 Cla09g02066 Cla-Chr9:38236836 1.35E-119 dispersed
Cla01g02375 Cla-Chr1:37446543 Cla09g02066 Cla-Chr9:38236836 5.30E-51 dispersed
Cla01g02376 Cla-Chr1:37449726 Cla09g02066 Cla-Chr9:38236836 2.67E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02066 K05389 - csv:101216032 604.364