Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02081 ATGTCTTTGGGCTACGCTGAGAAGCTTTCGTACATAGAAGACGTAGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCACGTTTTAGAAGAAAAGATTGAACGATTAACTATGATGATACAAAAGAGTAAGCATCTAGTGGTGTTTACCGGTGCAGGAATATCAACCTCTTGTGGCATACCTGATTTTCGAGGTCCTAAAGGAATATGGACTCTTCAGGCGAGTTATATCTCTTTGCTATGTAAAGCCTTACCAGAAGCATCACTGCCGTTTCATCGCGCAATGCCAAGCATTACTCATATGGCTTTGGTTGAGTTGGAGAAGGCTGGTATATTGAAGTTCATCATTAGTCAGAATATTGATGGCCTCCATCTTCGATCTGGTATACCAAGAGAGAAACTTGCTGAATTACATGGGAACTCGTTCATGGAAACTTGCCCATCATGTGGAGCTGAGTATTTGAGGGATTTTGAAGTAGAAACTATTGGATTGAAAGATACTTCACGGAGATGTTCTGATGCCAATTGTGGAGCTAAGCTCAGGGATACAGTTCTTGACTGGGAGGATGCATTGCCTCCAAAAGAGATGAATCCGGCTGAGAGACACTGCAAGATGGCTGATATTGTATTGTGTCTAGGGACAAGTTTGCAGATCACTCCAGCATGCAACCTTCCTTTGAAATCACTTCGTGGCGGGGGAAAGATTGTAATTGTTAATCTTCAGAAAACTCCAAAGGATAAGAAAGCAAGTTTGGTTATCCATGGCCGTGTAGATAAGGTCATTGCAGGCATAATGGAGATCCTAAATATGCAGATTCCCCCGTTTGTTAGAATTGATCTTTTCCAGATTTTACTTTCTCAAGGCTTGAGTCTTGATAAGAAATTTGTTAACTGGACCCTTCGAATATTAAGTGTACATGGACAGAAAGCTCCATTGCCATTCATCAAATCTGTTGAGGTTTCATTCTTGGATAATCAAGATTACAAATCAGCTAATTTACAGAGCCAACCTTTTGTCCTTAAAAGAAGAACGGGAAAGGCAAAATCATTTGAAATGGTTTTGAGGCTCAATTTCAGCGAGGGTTGTGGTAGTTCACATGTTGAAATTAATATCCCTGTTGATTTTAAGGTCTCTGCAGATTGTGTGAGTCTCGATAAGGAAGTTGTATTTCAGAGACTAATAGAGGAGACAGTTCAAGATTCCTTCTGCGGAAAAAATGCAATTATCGAGCGAAAAGCCATCTCGATCCCAAAGAGTGAGGTCGCTGTATATGCCATCGTAACCAACATTATTAGGTACACCAAAAGCTTGAAAACATTAACAATAGATTCTCTTAGTAACGGCGACGTCAAACGCCAACGGGAAAGTGTAAATGGTTCTGCAACATCTAGGAAGCGGTCAAAACGACAGAAGCGAAAATCTAGATATTAG 1434 40.66 MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKIERLTMMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQASYISLLCKALPEASLPFHRAMPSITHMALVELEKAGILKFIISQNIDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYLRDFEVETIGLKDTSRRCSDANCGAKLRDTVLDWEDALPPKEMNPAERHCKMADIVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQKTPKDKKASLVIHGRVDKVIAGIMEILNMQIPPFVRIDLFQILLSQGLSLDKKFVNWTLRILSVHGQKAPLPFIKSVEVSFLDNQDYKSANLQSQPFVLKRRTGKAKSFEMVLRLNFSEGCGSSHVEINIPVDFKVSADCVSLDKEVVFQRLIEETVQDSFCGKNAIIERKAISIPKSEVAVYAIVTNIIRYTKSLKTLTIDSLSNGDVKRQRESVNGSATSRKRSKRQKRKSRY 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38330925 38352049 - ClCG09G021370.1 Cla09g02081 281501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02081 477 Pfam Sir2 family 52 221 IPR003000 GO:0070403
Cla09g02081 477 CDD SIRT7 45 257 - -
Cla09g02081 477 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 297 IPR029035 -
Cla09g02081 477 ProSiteProfiles Sirtuin catalytic domain profile. 35 274 IPR026590 -
Cla09g02081 477 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-(6/7) FAMILY MEMBER 1 476 - -
Cla09g02081 477 MobiDBLite consensus disorder prediction 454 477 - -
Cla09g02081 477 Gene3D - 140 189 - -
Cla09g02081 477 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SRT1 1 476 - -
Cla09g02081 477 Gene3D - 37 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02081 K11416 SIRT6, SIR2L6; NAD+-dependent protein deacetylase sirtuin 6 [EC:2.3.1.286] - csv:101212255 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00029 Cla-Chr2:346188 Cla09g02081 Cla-Chr9:38330925 1.60E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g671 . . . . . . . . . . . Cma09g01014 . . Sed04g3651 Cpe06g00822 . Bhi09g01778 Tan01g3196 Cmetu01g1518 . . Mch11g1279 . . . . . . . . . . Cone14ag1221 Cone15ag1242 Lsi02g01823 . . . . . . . . . . . . . Cmo09g01017 . . . . . . . . . . . . . Cla09g02081 Cam09g2169 Cec09g2234 . . . . . . Chy01g01142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006785 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 2 1 1 1 2 2 1 1 2 2 1 36