Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02082 ATGGCGGCGATGGAGAAGCTGTTCGTGCAGATCTTCGAGAGGAAGAAGTGGATCATTGACCAGGCCAAGCACCAGACCAATCTCTTCGACCAACACCTTGCTTCCAAGCTCATCATCGATGGAATTGTTCCTCCGCCTTGGCTCCACTCGTCTTTTCTTCATTCCCACATTTCTCATTTCGAAGAAGTGAACAAAAGTTTTATTTCTGGAGTTGAGTTCCCACGTTCGCCGCTTGACACCCATCGTTCTAGTTTGAATGAGGCATTTGTTGCAGACAGTGGGGAGGAGTTGCAGTACAGGTCGAATGAAGAAGCTGGTTCTTTAAACGATGGTTTTGATGCAGGAATTAGGCCAGCAGTTTCACACCAGTGTGACATAAGTGACGCCAGTGTCTTAAATTGCGTGCCTTGTGTTGACATGAGTCCTGTTTCTCCTCAAGGTGGAGGAGGCATAGTTTCAGAAAATTACCGAGATCCTACTCTGTCATTGGCAAGGTTACACAGATCTAAATCTAGGCAAAGGGCTTTGGAGTTGCGTAATAGTGTGAAATCTACAAGGTGTCAATCTCGGTGTGAGAACAAGAGTGATTCCATTGCTGGTGGGATTGTGGGATCTGCTATTGGTTTGCTGCAAGCTGATCACGAAGATGAATCAGGGTTGGCAAAGCCTTCCAGTAGCTGTAAGGGAATTGGTTCTGTAGAAGAAGAAACTAATGTTGGTTGCGAGCAGAAGGATATCGTTACAATAGTTGGAAGCCCTAAGTTTCAAAGTAGCTCTATTGATGTGGGCAATTCCTTAAACATTTCCTCTAAAAATGAAGCGTTATATGTAGCTGGAGGTTCAACGCAGAATTCTTATCAAGTAAATGAGCAATTTGACTCACCCAGACCTTCTTCTGGAAAGACTGAATACTGTGAAGAAGGGTCGGCAAAATGCAGGAGCCAGGAATATAATTTAGATAATGCTGAACAGTCTAGGTTGCAATGTAGCTCTTTGGATGTGAATAAATCTTCCTGCACTTTTCCTGAAGATGGAAGAGTATGTCCTATAGGAGGCTCAAAATTGCATTCTGATCAAGTGGACGAGCAATTGGACTTGCCTAAACCTTCTTCTGACAATATTGAGTGTCATCAAGAGGCGGTATTAGGACATTGCAGGAGCCATGACTATGATCTTGATAATGCTCTACAGTCTAGGTCACAACGAAGTTCCGTGGATGTGGATGATTCATCATGCATCGACACCAGTGATGGAAGATTGTTGGACTTGTCTAACCCTTCTTCTGGGAAAGTTGAATGCTGTGAAGAAACTATCTTAGGACATTGCAGGAGCCAGGAATGTAATTTTGATAATGCCCATCAGTCTGGGTCACAATACAGCTCCCAGGATGTGGGTAACTCTTCATATGTTGACTCTGAGGAGGGAGGATCATGTCCCATTGGAAGTTCAAAAGTGCATCCTGATGAAGTGAAAGAGCAATTGGACTTATCTAAATCTTCTTCTGACAATATGAAGTGCTGTGAAGAAAAGTTATTAGGAGATTTCAGTAGTAAGGAGCATAAACTTAATAATGCTCAAAAGTCTGGTATGCAACATAGCTCCCTGGATGCGGACGATTCATCATGCTTTTCTTCTGTAAATGGAACTTTATGTCCTGTTGGAAGTTTGAAGCGATATTCTGATCAAGTGAGTGAGCAGTTGGAGTTGTTTAGACCTTCTTCTGTCAATATTGAATGCTATGAAGAAGAGCTAGAAGATGGTAGGACCCAGGATTGTAATTTTGATAACAATGCGGAACAGTCTGGTCTAGATAAAATTTTCAGTTCACCGATAACAGGAGTAAGGGAGAAAACATCAGGTAAGAAGCCCTCCAGTTTTCTTGATGACAAGAGGGATGTTAATCAAAAAGAAAAATGCAATTCACCCCTTCATATACCTCTGCCACAGATTCAAGTAGACTCAGTGAAGGAAAATGGATCTGATGAAGGCATATCTGAATCTCAAAGTCAGAGGAGATATGACGACAGAGGAGATTTTAACGGAAATACTCTCTCATCTGCCAACAAGTCACTGCAAGGTTATGAACAAGTAACTACTTGTCCTTTGCTGCAAAGTGATCAACCTGCTGAACAAAATAGTTCTTTGAAAGATGGAGTACCGAATTTGCAGTATTCCCATGAACATGTAGTTGAAATTCCACTAGTGGATGCAGACGATGCATCAATTCTGATAAGAGATGCAGAAACATTTAGAGATCACATGGTCATGGTTCCTTGCATTCCTCCCGCTGGTGAAAGGGATAGTAATTTGGAGCAGCAACTGGAAAGTTCAGGCATCAATTCTGAGGGTTGCACTGATGACTTTAATGGTAACCATCATTGCATATCAACAGAGTGTCAGACTGCAGAAACATCAATAGAGTTAAAAACTTTCAGCTCAGTTTTGAAGTCATCTAGTTCTCACGAAGATGTGAGAAAGGTTGAGCTGCAAATGGAGAATGGTATTCCCGAATCTTTAAGCTTGAGGAGTGAGCAACTTCAAATTATCAACGCGAGTTCCATAGATAAAAAATTGATGCAGGAATTTGACGATGAAAAACCTGTCCTTGAATTTCAACGATTATCATTTTGTGAAGAAGATTACCAACTATCAAATGTGAGCATCGTCCCTATTGAAATGTTGCTTCTGGAAAAGGAAGCTCACTTAATGCAGGTGTCTGATTCTTCACCCACACTTCCAGTTAAAGAGGATCTCTCTAGGTCCGGATGTAATAACAGAGGCACACCATCGCAATATGTCATGCTAGAGAGCCAAAGTTTGGATCCCGGAGGAAATCTTCAGTTTGGAGATGATGAACTTCCTGTTGATACTGGGAAAACGGAAGGAGAGGAGGAAAATGGGAACCTTACTTCTTGCTCGCTTCTTACTCCCCTTATCCAAACTTCTCTTTATCTTAGTGCAGATAAGGATATGCCTGCATTAGAGGGGTTCCTAATGCAGTCTGATAATGAACAGCCATGCATTTCTGTTGGTGGAATCAACTTTGACAAATTAGAACTTTCAAAATGTATGATAGAACGTGCTAGCATCTTGGAGAAAATTTGTAAATCTGCTTGTATAAACAGTCCGTTATCCTCATCTTCAGAAAGTTTTCAGTTGAACAAGGTGACGGATATGTACCATTCTCTTCCTAATGGTCTACTTGACAGCATGGACTTGAAGAGTAACCTTTGGGTGAATGATCAAAATAAGCTACTGAAGGATGGTAGTAACTTCTTGAATGGAGAAGTCAACTGCTCTCCTCATGGGTCTTTTTTTGATTGCATGCAAAGCAGTAGCAGTAATTCAGCTAGCGATGTCAGGAAGCCGTTTGCATCTCCATTTGGTAAGTTGTTGGATAGAAATTCATTAAATTCCTCAAGTTCGGGAAAACGAAGCAGCCAGAACATAGAGCTTCCTTGCATTAGTGAAGAAACTGAGAGTACAGATGAGATTGATAATGAGTTTTCAAAGGATATGAGATCGAACAAGCGAGTAGCACTTGTTGACATTACAGAAAATGCAAACGTTCAGGTAACAGTTTCTGAAGCTGCAACGTTTGATGATAGATTGAGTTTAGAATCTTTAAACACGGAACTCAGCAAGACGGGGACTCATAATAGAACCAAGGAGAACCTGGGAAACCAGAAAAACAGTAAAAGGAAATATGTGGATGAGGCTGTAGATCTTGGTACCTTGCCAGGAGCAAACGGAGGTAAGAGAGTCACTAGGTCATCTTATAATAGATTTAGCAAGTCAGATTTATCCTGTAAAGAAAATTTCAGAAAAGAAGGCCCTCGATTCTCTGGGAAGGAATCCAAGCATAAAAATATCGTGTCCAATATTACTTCTTTTATTCCTCTTGTCCAACAAAGAGAATCTGCAACTATTGTGAAAGGGAAGAGGGATGTTAAGGTGAAGGCCATTGAGGCTGCTGAGGCTGCAAAACGCCTTGCAGAAAAGAAAGAAAATGAACGTCAAATGAAGAAAGAAGCCCTGAAACTTGAAAGAGCAAGAATGGAACAAGAGAATTTGAGGCAGATTGAACTTGAGAAGAAGAAGAAAGAAGAAGAGCGAAAAAAGAAAGAGGAAGAAAGGAAGAAAAAGGAGGCTGATATGGCAGCAAAGAAAAGACAGAGGGAGGAAGAAGAGAGGAAGGAGAAAGAAAGAAAAAGAATGCGTGTGGAAGAAGTCAGGAGACGATTAAGAGAGCATGGTGGGAAGTTACGATCTGATAAAGAGAATAAGGAAGCAAAACCCCAGGCCAATGAACAAAAACCACGTGACAGAAAGGCATGTAAGGATGCGACTGACAAACTGGACAAGGAAAGTGGACACAACAAATTTGACAAACTCTCAGTTACCGAGTCCAAGACTACTTCCAAAAGCAATGCTGGGAGTGGAAACTTTGTTGTGGACTCACAACCAACGAGTGTAGATTTTCTAGAGGCAGAGGTAAATGGAGGAACCACATTGAAACCTTTTGGAGGTAATTTTAGTGCTACATCTGAAAGATGTTCGGCTTTTAGAAGTAGGAAGTCTAATTTCTTGGCACTTGAAAATGGGATGGAAAATAGAATCTCCGAAACAAGTGAAGAACAATCATATCAGATTTCTCCTTATAAAGCTTCTGATGATGAAGATGAAGAGGATGACGATGATGGCATACAAAATAATAAATTTGTTCCTTCGTGGGCCAGTAAGGATCGCTTAGCTGCCCTCTTTGCTTCCCAGCAAAAATTGAATCCAGAAATTATCTTTCCACCGAAAAGCTTTTGTGATATAGCCGAAGGTTTTGCTGACAAATTTCTCAAGGAATTGCTGATCAGGTGA 4872 41.15 MAAMEKLFVQIFERKKWIIDQAKHQTNLFDQHLASKLIIDGIVPPPWLHSSFLHSHISHFEEVNKSFISGVEFPRSPLDTHRSSLNEAFVADSGEELQYRSNEEAGSLNDGFDAGIRPAVSHQCDISDASVLNCVPCVDMSPVSPQGGGGIVSENYRDPTLSLARLHRSKSRQRALELRNSVKSTRCQSRCENKSDSIAGGIVGSAIGLLQADHEDESGLAKPSSSCKGIGSVEEETNVGCEQKDIVTIVGSPKFQSSSIDVGNSLNISSKNEALYVAGGSTQNSYQVNEQFDSPRPSSGKTEYCEEGSAKCRSQEYNLDNAEQSRLQCSSLDVNKSSCTFPEDGRVCPIGGSKLHSDQVDEQLDLPKPSSDNIECHQEAVLGHCRSHDYDLDNALQSRSQRSSVDVDDSSCIDTSDGRLLDLSNPSSGKVECCEETILGHCRSQECNFDNAHQSGSQYSSQDVGNSSYVDSEEGGSCPIGSSKVHPDEVKEQLDLSKSSSDNMKCCEEKLLGDFSSKEHKLNNAQKSGMQHSSLDADDSSCFSSVNGTLCPVGSLKRYSDQVSEQLELFRPSSVNIECYEEELEDGRTQDCNFDNNAEQSGLDKIFSSPITGVREKTSGKKPSSFLDDKRDVNQKEKCNSPLHIPLPQIQVDSVKENGSDEGISESQSQRRYDDRGDFNGNTLSSANKSLQGYEQVTTCPLLQSDQPAEQNSSLKDGVPNLQYSHEHVVEIPLVDADDASILIRDAETFRDHMVMVPCIPPAGERDSNLEQQLESSGINSEGCTDDFNGNHHCISTECQTAETSIELKTFSSVLKSSSSHEDVRKVELQMENGIPESLSLRSEQLQIINASSIDKKLMQEFDDEKPVLEFQRLSFCEEDYQLSNVSIVPIEMLLLEKEAHLMQVSDSSPTLPVKEDLSRSGCNNRGTPSQYVMLESQSLDPGGNLQFGDDELPVDTGKTEGEEENGNLTSCSLLTPLIQTSLYLSADKDMPALEGFLMQSDNEQPCISVGGINFDKLELSKCMIERASILEKICKSACINSPLSSSSESFQLNKVTDMYHSLPNGLLDSMDLKSNLWVNDQNKLLKDGSNFLNGEVNCSPHGSFFDCMQSSSSNSASDVRKPFASPFGKLLDRNSLNSSSSGKRSSQNIELPCISEETESTDEIDNEFSKDMRSNKRVALVDITENANVQVTVSEAATFDDRLSLESLNTELSKTGTHNRTKENLGNQKNSKRKYVDEAVDLGTLPGANGGKRVTRSSYNRFSKSDLSCKENFRKEGPRFSGKESKHKNIVSNITSFIPLVQQRESATIVKGKRDVKVKAIEAAEAAKRLAEKKENERQMKKEALKLERARMEQENLRQIELEKKKKEEERKKKEEERKKKEADMAAKKRQREEEERKEKERKRMRVEEVRRRLREHGGKLRSDKENKEAKPQANEQKPRDRKACKDATDKLDKESGHNKFDKLSVTESKTTSKSNAGSGNFVVDSQPTSVDFLEAEVNGGTTLKPFGGNFSATSERCSAFRSRKSNFLALENGMENRISETSEEQSYQISPYKASDDEDEEDDDDGIQNNKFVPSWASKDRLAALFASQQKLNPEIIFPPKSFCDIAEGFADKFLKELLIR 1623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38358450 38368127 + ClCG09G021380.2 Cla09g02082 281502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1537 1571 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1349 1487 - -
Cla09g02082 1623 Coils Coil 1318 1418 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 605 686 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 621 638 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 454 497 - -
Cla09g02082 1623 PANTHER TROPONIN I 162 1562 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1537 1554 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 605 619 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 454 473 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1469 1487 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 907 926 - -
Cla09g02082 1623 PANTHER TROPONIN I 162 1562 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1135 1166 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1349 1468 - -
Cla09g02082 1623 MobiDBLite consensus disorder prediction 1135 1156 - -
Cla09g02082 1623 Pfam Inner centromere protein, ARK binding region 1557 1610 IPR005635 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02082 - - - csv:101214907 2294.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g675 . . . . . . . Bma13g01118 . . Cma01g01073 Cma09g01015 Car01g00949 . Sed07g2762 Cpe06g00823 Cpe02g00825 Bhi09g01779 Tan01g3197 Cmetu01g1493 . . Mch11g1282 . . . . . . . . . . Cone14ag1224 Cone15ag1245 Lsi02g01822 . . . . Blo10g00866 . Bda12g00967 . . . . . Cmo01g01117 Cmo09g01018 . . . . . . . . . . . . . Cla09g02082 Cam09g2170 Cec09g2235 . . . . . . Chy01g01141 Cme01g00895
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006069 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39