Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02083 ATGGCGTCTCTCGTTTCACTCCTCAATCTCCCTCTCTTCTCTCTGCTCTTAATCGCTCTCGCCGCCGCGCCGCCCTTCGTTGCTTCGCATCACTTCCACGTCGGCGAAAACAGAGGCTGGTCAAACCCTACCGGAAACCACACGCATAGCTTCAACTTCTGGGCCTCACAAAATCGCTTCCATGTCGGCGACACTCTCTATTTCGAGTACACAAACGATTCGGTTCTGGTTGTGAACTACACGAATTACAGAGACTGTATCGTTTCGGACCCGATCGCGAAGTTTGAGAATGGAAGTGGCGGTACGATTTTCCGATTGGATCGAGATGGAGATTTCTATTTCATCAGTGGAAATATAGAGCATTGTGTGAACGGACAGAAATTAGCAGTGCGAGTGATGAATGATGATGATGATGATGATGATGAATCTGCAGATTCACCGGAAGGAATGGAGTCGTGGAATTGGGGACCGCCGTCCCTGAATTCGACGGTGAAGGCGACGTTGGCGTCGTATTTCGCGACGGCGATTGGAGTTAAGTCAACTTTGGAGAAGTTGATTTTCTCTGTCAGGCCTTTGGTACATTCTGAGACATCAGTCAGACGGTTTCACCCTGTGGCTCCACTCACTGGCACTGCAATGGCCGCTTCAATGGCGGCTTCGGAGCTCGAAGTTGCAGTCTTTATCGATACTGATTTCGGCACCCGCCTGGCAGTTGCCGTTCCGCCGGACATCTCTGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTAAAGCAAAACTCGAACTTCTACCATTTGCCTGACACGTTGCTCACGAAACTTGCTTCCCGGCTAGAAGTGATGCAGTTTCTTCATGTCAAAGCACGACCTTTGAATGAGTTTATCGAGCCTCGTTTACCCGAAAATGCTGATTGTTTCCCCAACCTAAACTATGTCACCTACCCTACGGAAAGCCGAGGCTTCTTGGGAATTGCCTGGAAGAGTAAAATCAGAATCAATGGTAAGAAACATACAAGAAAAAGGTTCAGAAGGATGAATTGCTCATCAAGACTAGTTGGCCGAGGCATCTTAGCCTGGAATACAAGGAGAAAGAGGAAAATAACTAACAAAAAACAGCTTTTAGAGCACATGGAAAAGAACTCTGATATGGGGTGTCCGATAAAAGATGCGGAAAATCCGAATGGCTCGATTGATACATCATTGTATCATTGTGTGGCAAATGATGAAGTGAGAATTACAAAACAACAAAAGTTGGCAAGCTCCTCATTGTTAGAGGCGGCCACAGCCAGTGAGTTATCATCTGAAGTCATGTCTGTTTCAAGTATCATAAAAAGATATTTTTCGAGCTATGACGAAGTGAGCAGTGTTTCAAACCAATCAAGCTACAACATTACTCAAAGTCAGCCAGAAGAGTATTTGAAGATGAAGAAGAATATGGCAAGAGGCCCAAGCTTGTTATCTTTGAAATTACCATTTAAAGCATGTTCTCAAAAGCCTGAGAGATCTAAGCTTGGGAAAAGGTTGGTGATGGCTTCATATAATCTTGGGATTTCTCCCATCAGGGGAAGACCAGAAATTTCACTGTGCAATGCTAAAGGTAAAAAGTTTCAAGAACTGACATCTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAGATTGA 1719 44.79 MASLVSLLNLPLFSLLLIALAAAPPFVASHHFHVGENRGWSNPTGNHTHSFNFWASQNRFHVGDTLYFEYTNDSVLVVNYTNYRDCIVSDPIAKFENGSGGTIFRLDRDGDFYFISGNIEHCVNGQKLAVRVMNDDDDDDDESADSPEGMESWNWGPPSLNSTVKATLASYFATAIGVKSTLEKLIFSVRPLVHSETSVRRFHPVAPLTGTAMAASMAASELEVAVFIDTDFGTRLAVAVPPDISAGALKREVERVHFNCFPSIGEIKVDGFMVKQNSNFYHLPDTLLTKLASRLEVMQFLHVKARPLNEFIEPRLPENADCFPNLNYVTYPTESRGFLGIAWKSKIRINGKKHTRKRFRRMNCSSRLVGRGILAWNTRRKRKITNKKQLLEHMEKNSDMGCPIKDAENPNGSIDTSLYHCVANDEVRITKQQKLASSSLLEAATASELSSEVMSVSSIIKRYFSSYDEVSSVSNQSSYNITQSQPEEYLKMKKNMARGPSLLSLKLPFKACSQKPERSKLGKRLVMASYNLGISPIRGRPEISLCNAKGKKFQELTSLAKSSCFEISDSED 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38375953 38384323 + ClCG09G021390.2 Cla09g02083 281503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02083 572 ProSiteProfiles Phytocyanin domain profile. 30 134 IPR003245 GO:0009055
Cla09g02083 572 SUPERFAMILY Cupredoxins 29 133 IPR008972 -
Cla09g02083 572 Gene3D - 29 138 IPR008972 -
Cla09g02083 572 PANTHER EARLY NODULIN-LIKE PROTEIN 2 20 185 - -
Cla09g02083 572 MobiDBLite consensus disorder prediction 135 157 - -
Cla09g02083 572 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055
Cla09g02083 572 CDD OsENODL1_like 32 133 IPR041846 -
Cla09g02083 572 PANTHER BLUE COPPER PROTEIN 20 185 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02083 - - - csv:101220553 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01711 Cla-Chr8:29685149 Cla09g02083 Cla-Chr9:38375953 1.70E-09 dispersed
Cla09g01907 Cla-Chr9:36736478 Cla09g02083 Cla-Chr9:38375953 5.41E-26 dispersed
Cla09g02083 Cla-Chr9:38375953 Cla11g01755 Cla-Chr11:31149410 6.86E-20 dispersed
Cla09g02083 Cla-Chr9:38375953 Cla10g00524 Cla-Chr10:6934499 5.23E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g679 . . Bda07g00414 . . . . . . . Cma01g01071 . Car01g00947 . . . Cpe02g00827 Bhi09g01781 . . . . . . . . . . . . . Cone6ag0006 . . . Lsi02g01820 . . . . . . . Bpe11g00591 . . Bma14g00678 . Cmo01g01114 . . . . . . . . . . . . . . Cla09g02083 Cam09g2171 Cec09g2236 . . . . . . Chy01g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012285 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29