Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02088 ATGGCTGCCACCAAGTTCAACAAGAAGAAGGGTGTGAAACGGGACGACCCTCCATCGGAAAGGAAGAAGAAGGACGAGCTCTTCACACCTAAACGTTCTAAGGAGGAAGATGATGATTCTGAACTTTCTGATGCTCTGGATGAGGAAGAAGTAGATAATGGACTGATTGATTGTAACGAAGAAGGATCTGAGTCTGGTTCTGAAGATTCTTCTGATGAGAATGATTCAGGCTCGGTTTCAAGTTCTGATTCTGATGAAACTGACATCGAAGACAAGTCGAGAATCATCGATGAAAAAAGGGCGAGGGAAGAAAAAGATGCAGCGGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTGCCAACCAAGGAGGAACTTGAAGAGGAGACGCTTAGACCTCCTGATCTTTCAAATTTACAAAGGCGGATAAGAGAGATAGTTCGAGTTCTTTCGAATTTCAAGGCTTTGAGGCAAGAGGGAGCAACCCGTAAGGATTATGTTGAACAACTTAAGAAAGATATTGGATCATACTATGGTTATAATGAATTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCGATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATCTGGCAGATGTACTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTGATGGCTCTTGCTCCTCAGGAAAAAGAACGAATCGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGGATGATATTTGCAAATGAGATTAAAGCACCAAGATTGAAGTCGCTTACCGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCAAAAGTATTGGGCAGGAATACAGCTGATAGAGTTCTTTTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCTTAGAAGAAATCCAGAAATGTGCTGAGTTGCAGAAGCAACTTATACTCGCTGCAATTGACATGGTTGATTCAAATTCAAAAACTGGGGGATATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTATGCACTTAAAAAGAGGGATGTGAAACTTGTGCCATGTGGCCTTGATTTTGGACGTCCCGGGTTCATCCGGTTCAGGGAAAAACGATTCCACCCATCTTTAGAAAAGACTAGACGTTTCTACCCCCATGTCCACAACATGGACGGGTTTTTTGTGGCGAAGTTGAAGAAAATGAGCAACAAGATTCCAACTGCACGATCTTCTGAATCATTGAAAGAGGCCGTGGAAGAAGATGATGGTGCAGAGAAGAGCGGAAATGAGAAGAATGATGGTGAATGTCTTCACCCGCAATTAAATGACAGTAAAAAGAGGAAGAAGGTTTCACAAAATCACGACGTCAAAAATGACAAAGAATCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTTCAAAAGCTAGGGAGGAAAAACGACAAGCTTTGAGGGAAAAGAAAGATGGGAGCAAGAAAGGGTAA 1782 42.03 MAATKFNKKKGVKRDDPPSERKKKDELFTPKRSKEEDDDSELSDALDEEEVDNGLIDCNEEGSESGSEDSSDENDSGSVSSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKEESDEFRLPTKEELEEETLRPPDLSNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGRNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDSNSKTGGYVVYSTCSIMVDENEAIVDYALKKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTARSSESLKEAVEEDDGAEKSGNEKNDGECLHPQLNDSKKRKKVSQNHDVKNDKESKPTVEKRKKRKFPSREEISKAREEKRQALREKKDGSKKG 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38417727 38424198 - ClCG09G021450.1 Cla09g02088 281508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02088 593 MobiDBLite consensus disorder prediction 8 39 - -
Cla09g02088 593 MobiDBLite consensus disorder prediction 40 71 - -
Cla09g02088 593 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 216 492 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cla09g02088 593 Coils Coil 572 592 - -
Cla09g02088 593 Gene3D Sun protein; domain 3 170 277 - -
Cla09g02088 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 178 492 IPR029063 -
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase signature 264 278 IPR023267 GO:0001510
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase signature 293 303 IPR023267 GO:0001510
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase signature 361 373 IPR023267 GO:0001510
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase signature 415 431 IPR023267 GO:0001510
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase signature 475 492 IPR023267 GO:0001510
Cla09g02088 593 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 204 493 IPR001678 GO:0008168
Cla09g02088 593 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 200 277 IPR031341 -
Cla09g02088 593 Gene3D Vaccinia Virus protein VP39 280 587 IPR029063 -
Cla09g02088 593 MobiDBLite consensus disorder prediction 1 110 - -
Cla09g02088 593 MobiDBLite consensus disorder prediction 505 593 - -
Cla09g02088 593 MobiDBLite consensus disorder prediction 85 110 - -
Cla09g02088 593 Pfam 16S rRNA methyltransferase RsmB/F 281 491 IPR001678 GO:0008168
Cla09g02088 593 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 22 566 IPR023267 GO:0001510
Cla09g02088 593 PANTHER BNACNNG49010D PROTEIN 22 566 - -
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 167 187 IPR023273 GO:0008168
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 200 212 IPR023273 GO:0008168
Cla09g02088 593 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 223 236 IPR023273 GO:0008168
Cla09g02088 593 Coils Coil 101 121 - -
Cla09g02088 593 MobiDBLite consensus disorder prediction 497 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02088 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 1014.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01855 Cla-Chr5:30431830 Cla09g02088 Cla-Chr9:38417727 1.78E-16 dispersed
Cla09g02088 Cla-Chr9:38417727 Cla11g01611 Cla-Chr11:29759554 1.10E-07 dispersed
Cla09g02088 Cla-Chr9:38417727 Cla01g01820 Cla-Chr1:33130466 5.48E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42