Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g02094 | ATGCGAGTAGAGTTTCGCTTCTTCTGTCGAGTCAAAGCTCTCCACGTTGCCATTTCAAATTGGGCGGGCCACTCTGAGCTTCCCCTTCTTCAACAATGGAGTATCTGGGTTAGGTTGGTCGTTAACGGGGGTTTGGAATTTCTGATTATGACGGAGGAAGATTCGCGGAGCCTGGTTGGTTTAGTTGGAAAAGGTCAATTTGCCATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCATTTAATTCTGATGCTACTACGTCTTTCATATCAATGCCGGTGTCTGGAGAAGATGGTGCTACGGGGGATGATATCGGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAACTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTGTGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCTAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAATTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCATGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTTCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCGTGGCTCGGGCGGTAAGACTCGGAATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTATGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG | 2310 | 44.37 | MRVEFRFFCRVKALHVAISNWAGHSELPLLQQWSIWVRLVVNGGLEFLIMTEEDSRSLVGLVGKGQFAMIHSGFFLAGPSFNSDATTSFISMPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLCGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLIWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRQLPCFHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPRGSGGKTRNKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAEPGGSFSYEGYFTTRMDQDRISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK | 769 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38472958 | 38480724 | + | ClCG09G021510.2 | Cla09g02094 | 281514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g02094 | 769 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 541 | 768 | - | - | |
| Cla09g02094 | 769 | ProSiteProfiles | Zinc finger RING-type profile. | 723 | 764 | IPR001841 | - | |
| Cla09g02094 | 769 | SMART | ring_2 | 369 | 409 | IPR001841 | - | |
| Cla09g02094 | 769 | SMART | ring_2 | 723 | 763 | IPR001841 | - | |
| Cla09g02094 | 769 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 678 | 769 | IPR013083 | - | |
| Cla09g02094 | 769 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 318 | 412 | IPR013083 | - | |
| Cla09g02094 | 769 | ProSiteProfiles | Zinc finger RING-type profile. | 369 | 408 | IPR001841 | - | |
| Cla09g02094 | 769 | Pfam | Ring finger domain | 722 | 764 | IPR001841 | - | |
| Cla09g02094 | 769 | Pfam | Ring finger domain | 368 | 408 | IPR001841 | - | |
| Cla09g02094 | 769 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 108 | 408 | - | - | |
| Cla09g02094 | 769 | SMART | ringv_2 | 722 | 764 | IPR011016 | GO:0008270 | |
| Cla09g02094 | 769 | SUPERFAMILY | RING/U-box | 364 | 408 | - | - | |
| Cla09g02094 | 769 | CDD | RING-H2_RNF111_like | 721 | 764 | - | - | |
| Cla09g02094 | 769 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 108 | 408 | - | - | |
| Cla09g02094 | 769 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 541 | 768 | - | - | |
| Cla09g02094 | 769 | SUPERFAMILY | RING/U-box | 718 | 767 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla08g01288 | Cla-Chr8:25762056 | Cla09g02094 | Cla-Chr9:38472958 | 2.43E-42 | dispersed | |
| Cla09g02094 | Cla-Chr9:38472958 | Cla10g00333 | Cla-Chr10:4344080 | 3.36E-24 | dispersed | |
| Cla09g02094 | Cla-Chr9:38472958 | Cla06g00655 | Cla-Chr6:8107040 | 1.10E-08 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g02094 | - | - | csv:101217150 | 605.52 |