Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02121 ATGGCTCTGCAGAGGATTCCTCACAGCACTCTAATGGAGATCTTGTTGAAGCTGGACCTCCAAACCCTCTGCTCCGTCGCTTGTGTCAGTAAAACCCTACAATTCGCCGTCGTTGAAGCCATTTCTCTCCTCTCCACTCTCCATCTTCCTATCACTTTCTCTCCAGATTCTCAAACTCTCAAGATTGGCATTCTTGGTCGGTGCCGAGGCATGAGAAGCCTTACTGTTAATTGCCTCCGTCTTGATGATTCTTCTCTCGTGGATTTTCTTGGCCCTCATTTACTCGAGCTGAATTTGCTTTGCTGCTCTTTACTCTCTTATAAATTCCTTGCTGCTGTAGGCGAACTTTGTCCCAATTTGAGGTGCGAAAATATCAGATATCTTCGCATTTGCCAGTCTGATTGTGTGAATCGACTGATTTCTGTTCTTGTTCCGGTGCTTGTGCTTGGATTGGTAGCTCGAGACTCTCCTGAAGTATTCAATAGAAACTTGGCTGAACTGCTCACAAGATGCTTGTTCTTAGATTTAATATCCCTGAAGATTCGAGGACCAGGAGATGTTGAGGCTAATTACTTTAGTGCTGTTGAAGCATTTCTTCCCAAAACAGTCAAAACACTGAAGTTGAAGTCACTGCTTCATCAAGAAGCAATTTGCATCATAAACAAACTAAGAGATTATGGGAACTCTTTAATCCCCACCTATTCAAGAAACTTTGAATGTCCTCAGTTATCTTCAGGGTTAATGTTGCAGTGCTTGTCACTTACCTTGGATGTTATTTCTAACGAGTTGATTATTACCATTGTCGACTCACTTCCTTTTTTGGCAGAGCTTCACTTGGAAGACATGCCGAACCAAAAACAATTGGTGCACCGTGACTTGACCAACAGGGGACTTCAGTCATTGAGCACTTGCCATAATCTGATATCACTTTCTCTTATTCGTGGTAGGCATAACCACCAAGTCTCTTTCAAAAAGCTGAATGATATGGGCATGTTTCTCTTGTCTGAGGGTTGCAAAGGTCTTGAGTCAGTGAGATTCTGTGGATTCTCTAAAGTCAGTGATGCTGGATTTGCATCGATCTTTCACTCGTGCAATAGGCTGAAGAAATTTGAGATTCGTAATTCATCACATTTCTCAGACCTTGCACTCGATGGTTTTGATGCCATCGGATGTTCTGTAACAGAGTTGAGATTATTATCATGCAGTCTTATAACTTGTGAATCTGTGAAGCAGTTGGCCTACTCTACAAGCTTGGAAGTCCTTGATCTGTGTGGCTGCAAGAGCATATCAGATTCTTGCCTTGAATCCATTTCCACTTTGTGCAATTTATCATCACTGAATCTAACATCAACTGATATAACCGATTACGGTTTATCTATTCTTGGTCAGGGGAGTCTACCGATTGTACAATTGTCTCTTCGACATTGTAAGAGAGTAACCGAAGAAGGAATGTATCAATTGTTTTATGGTGGTGGGACAATAAGCACGACGTTATCTGCCTTGGATCTTGGACACATTTCAGGAATAACCGATCGAGCAATCCAAATAATTGCTTCTGCTGGTGTTGGGATTACTGAGTTATGCATCAGATCTTGCTTCCATGTGACTGATTCTTCAGTGGAAGCTTTGGCGATGAAGAAACAATTCCAGGGTGAAGGTAAGTTACTTCGTAGACTTGATCTTTTTAATTGCATTGGTCTATCAATTGGTGCATGTAGATCATTTAGGGGCCCTCAGTTTCGTGGGTTACAATGGCTAGGAATAGGCAATACTCGTTTGAGCAGTAATGGAGATGTTAGTTTAGTTGAATTTTGTTCCAAACGACCTTGGTTGACTTTGTGTTTGGAAGGCTGTGAAGTTGGATGTCATGATGGATGGCAATTCCATAGATCATAA 1896 41.77 MALQRIPHSTLMEILLKLDLQTLCSVACVSKTLQFAVVEAISLLSTLHLPITFSPDSQTLKIGILGRCRGMRSLTVNCLRLDDSSLVDFLGPHLLELNLLCCSLLSYKFLAAVGELCPNLRCENIRYLRICQSDCVNRLISVLVPVLVLGLVARDSPEVFNRNLAELLTRCLFLDLISLKIRGPGDVEANYFSAVEAFLPKTVKTLKLKSLLHQEAICIINKLRDYGNSLIPTYSRNFECPQLSSGLMLQCLSLTLDVISNELIITIVDSLPFLAELHLEDMPNQKQLVHRDLTNRGLQSLSTCHNLISLSLIRGRHNHQVSFKKLNDMGMFLLSEGCKGLESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNSSHFSDLALDGFDAIGCSVTELRLLSCSLITCESVKQLAYSTSLEVLDLCGCKSISDSCLESISTLCNLSSLNLTSTDITDYGLSILGQGSLPIVQLSLRHCKRVTEEGMYQLFYGGGTISTTLSALDLGHISGITDRAIQIIASAGVGITELCIRSCFHVTDSSVEALAMKKQFQGEGKLLRRLDLFNCIGLSIGACRSFRGPQFRGLQWLGIGNTRLSSNGDVSLVEFCSKRPWLTLCLEGCEVGCHDGWQFHRS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38814028 38816547 - ClCG09G021800.2 Cla09g02121 281541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02121 631 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 6 589 - -
Cla09g02121 631 Gene3D Ribonuclease Inhibitor 48 489 IPR032675 -
Cla09g02121 631 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Cla09g02121 631 PANTHER UNCHARACTERIZED 6 589 - -
Cla09g02121 631 SUPERFAMILY F-box domain 4 37 IPR036047 GO:0005515
Cla09g02121 631 SMART LRR_CC_2 521 546 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 390 415 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 416 440 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 91 116 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 495 520 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 338 363 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 441 464 IPR006553 -
Cla09g02121 631 SMART LRR_CC_2 465 490 IPR006553 -
Cla09g02121 631 Pfam F-box domain 4 34 IPR001810 GO:0005515
Cla09g02121 631 Gene3D Ribonuclease Inhibitor 494 614 IPR032675 -
Cla09g02121 631 SUPERFAMILY RNI-like 291 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02121 - - - csv:101218770 983.786
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00399 Cla-Chr2:3864321 Cla09g02121 Cla-Chr9:38814028 1.33E-65 dispersed
Cla09g02121 Cla-Chr9:38814028 Cla11g00282 Cla-Chr11:3251337 4.22E-06 dispersed
Cla09g02121 Cla-Chr9:38814028 Cla05g01740 Cla-Chr5:29218923 1.43E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24