Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02163 ATGGCGGCCAAATCTGTATCTCAAAATCGAATCAGAGCCAAACTCCATTTCTTCTATGCAATTCTTCTGCTGCAGTTTGCTACCTTCGGATTGGCAGCCACAGCCAAGCTTCATCCAGAAGAAGTGAAAGCTTTGAAAGAGATCGAGAAGAAGATAGGGAAAAACGATTGGAATTTTAGCGTAGATCCTTGCAGTGGAGAAGGAAAATGGCGAGTCGTTAATGGAAGAAAAGGATTCGAAAGCTCCGTCACCTGTGATTGCTCTTTCAACCACAACTCCACTTGCCGTATCGTCGCCATAGCTCTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACTGGTTCTATCCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCGGGCCCATTCCCGAAAGTTCTTACTAATATCACCACCCTCAGAAACCTGAGCATCGAAGGAAATCAATTTTCCGGCCAAATTCCGCCAGAGGTCGGAAAACTAATTAGTTTGGAAAAATTAGTTCTGTCATCCAATGGCCTCACCGGAGAATTGCCTAAAGCACTAGCGAAATTGTCGAACTTAACTGATGTGAGGATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAATTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCTATACCCTTAAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCCTTTTCCGTCGTTGAGCAAAATGAAATCCCTGAAGACTCTGATACTGAGGAAGTGCTTAATTTTTGGAGTAGTCCCGAAATACATCGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGTTACAATGACTTGACTGGCGAAGTTCCTGCATCTTTAGAACGACTGGAAAAAATAGATTACATAATTTTGACAGGAAACAAGCTCAATGGAATTATTCCTGGTTGGATTTTAGGAAGCAACAAGAACGTAGATCTTTCTAATAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGTAGTGTAAATTTAGTAGAGACTTACTCACCGTCTGCAGAAAAATTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTTCCGTGTTCTGCATCAAGGGAACAGCATCACTACTCATTGCACATTAACTGTGGCGATAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCATAACAAATACATCTGCTCTTTCAAATGTCTCTGTGACTGATTCAGAACTGTACACAAAAGCAAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAAATTGTATTTATAAATGACAGTTCATTCAACAGCCTGGGGAGGCGAGTTTTTGATGTGTACATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATAGAACATGAAGCAGGGGGTACTGGTAAGCCCATTATGAAAACATTTACTGCAGTTGTCACAAGTCATACATTGAAAATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAGGACCACGTGAAGAAGCATCACACCATCATAATTATTGGGACAGCAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGCTATGCATTATGAGGAGGAACGGATGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCGAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTCTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCCGCACTGCAACATCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAGAAATGACCCAGCTTCTAAATTGAGATTGGACTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGACTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTATTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACTAGGGTTGCTGGAACCATTGGTTATATGGCTCCTGAATATGCAATGCGTGGATGCTTGACCTGCAAAGCTGATGTTTATAGCTTTGGAGTTGTTGCCCTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAAGAGGAATTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAGGGAAGCCTATTGGAGTTGGTGGATCCAGCCTTGGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTGCGGCCTCTAATGTCCCAAGTCGTCAGCATGCTCGAAGGTCGAACTCCAGTGCAAGCACTTCTTTCTGACCCAGGATTTTCAGCCATCAATTCCAAATTAAAGGCACTCAGAAATCACTTTTGGCAACAATTGAGCCCAACTCACAGTTTATCATTGGACGATTTCCCTAGTGATTCCTTGAGTTCGAATGTGGACCCGGAGGCAGAAGAGAATTACAATCTTGTAGGACCCCATTCTGTTAACATGACTGGAACAAATTAG 3081 41.9 MAAKSVSQNRIRAKLHFFYAILLLQFATFGLAATAKLHPEEVKALKEIEKKIGKNDWNFSVDPCSGEGKWRVVNGRKGFESSVTCDCSFNHNSTCRIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGQIPPEVGKLISLEKLVLSSNGLTGELPKALAKLSNLTDVRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISTMTSLTDLRISDLKGGRSPFPSLSKMKSLKTLILRKCLIFGVVPKYIGDMKKLKNLDLSYNDLTGEVPASLERLEKIDYIILTGNKLNGIIPGWILGSNKNVDLSNNNFTWENSSPAECPRGSVNLVETYSPSAEKLTRIHPCLKRNFPCSASREQHHYSLHINCGDKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIMKTFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKDHVKKHHTIIIIGTAAAAFVLLLLVLCIMRRNGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTCKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSNVDPEAEENYNLVGPHSVNMTGTN 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39277179 39288728 + ClCG09G022240.2 Cla09g02163 281583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02163 1026 ProSiteProfiles Protein kinase domain profile. 679 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g02163 1026 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Cla09g02163 1026 Pfam Protein tyrosine and serine/threonine kinase 682 894 IPR001245 GO:0004672|GO:0006468
Cla09g02163 1026 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 73 999 - -
Cla09g02163 1026 SUPERFAMILY Protein kinase-like (PK-like) 664 952 IPR011009 -
Cla09g02163 1026 SUPERFAMILY L domain-like 85 369 - -
Cla09g02163 1026 Gene3D Transferase(Phosphotransferase) domain 1 755 960 - -
Cla09g02163 1026 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Cla09g02163 1026 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 999 - -
Cla09g02163 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cla09g02163 1026 SMART serkin_6 679 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g02163 1026 Gene3D Ribonuclease Inhibitor 274 408 IPR032675 -
Cla09g02163 1026 Gene3D Ribonuclease Inhibitor 38 273 IPR032675 -
Cla09g02163 1026 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Cla09g02163 1026 CDD STKc_IRAK 685 953 - -
Cla09g02163 1026 Gene3D - 415 606 - -
Cla09g02163 1026 Pfam Malectin domain 419 602 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00689 Cla-Chr3:8343865 Cla09g02163 Cla-Chr9:39277179 0 dispersed
Cla07g00957 Cla-Chr7:25743733 Cla09g02163 Cla-Chr9:39277179 0 dispersed
Cla09g02163 Cla-Chr9:39277179 Cla09g02204 Cla-Chr9:39646954 0 dispersed
Cla09g02163 Cla-Chr9:39277179 Cla11g01693 Cla-Chr11:30524384 3.07E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80830 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02163 - - csv:101219400 1899.02