Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02164 ATGATATCCAAGGTTCTCCATCATACTCCGCTTGTGCTAATGTTTTTGATATGCTCTATAGTGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTCGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATGTGGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCGTCAGGTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGTATAAGTTGTATTGTGCCTCTTAAAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGAGCTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCAGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGGTATCTCGCTGAAAAGATTTTCTCAGCTCATGAAATTGGATACATTGGATTGTTATTTGGTTCTCTTAAGTTGAAGAAACCATTCAAGTACCTAAATGATTTTTCAGGCACTTTTGTTTTATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTATTAGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCCGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCGTTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCTGATGACATTGTAGAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACGGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGGTTCTTCTCTCACCCTCTCCGGAACAGCTTGTTATTTGAATTTCTTTCGTGTTTCTTTTGAATCTCGGTTTGTGTTTACGATTCAATGGTTCACTTCCAAAACCAGCTTGAACTGTGACGTCGTAATCATGATTTTGCGTGCAATTCAAGTCGAAATTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATAGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCTAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCTAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA 3825 43.53 MISKVLHHTPLVLMFLICSIVVAFCPNNNEVHIYKSSQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDVGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCISCIVPLKEPGVSTIKRFSTSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYLAEKIFSAHEIGYIGLLFGSLKLKKPFKYLNDFSGTFVLYGNQAVADELTGLYENSRAAGFGSEVLVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPVLADDIVESTRSLSLWNLGQFIVPIYSICSRTDLRSFCTSPTAGSSLTLSGTACYLNFFRVSFESRFVFTIQWFTSKTSLNCDVVIMILRAIQVEITMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGVSISSAHNLLSAAAEKDEDIIF 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39291240 39306976 + ClCG09G022250.2 Cla09g02164 281584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02164 1274 Pfam Anaphase-promoting complex subunit 4 WD40 domain 101 169 IPR024977 -
Cla09g02164 1274 SUPERFAMILY WD40 repeat-like 22 233 IPR036322 GO:0005515
Cla09g02164 1274 SUPERFAMILY Amidase signature (AS) enzymes 373 922 IPR036928 -
Cla09g02164 1274 PANTHER TRANSAMIDASE 401 920 IPR000120 GO:0003824
Cla09g02164 1274 SMART WD40_4 186 225 IPR001680 GO:0005515
Cla09g02164 1274 SMART WD40_4 84 123 IPR001680 GO:0005515
Cla09g02164 1274 SMART WD40_4 129 169 IPR001680 GO:0005515
Cla09g02164 1274 SMART WD40_4 40 79 IPR001680 GO:0005515
Cla09g02164 1274 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 401 920 - -
Cla09g02164 1274 Pfam Amidase 421 913 IPR023631 -
Cla09g02164 1274 Gene3D Amidase signature (AS) domain 400 926 IPR036928 -
Cla09g02164 1274 Pfam ATP synthase subunit D 1030 1221 IPR002699 GO:0046961
Cla09g02164 1274 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 407 924 IPR004412 GO:0006412|GO:0030956|GO:0050567
Cla09g02164 1274 ProSitePatterns Trp-Asp (WD) repeats signature. 66 80 IPR019775 -
Cla09g02164 1274 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 169 IPR001680 GO:0005515
Cla09g02164 1274 ProSitePatterns Amidases signature. 547 578 IPR020556 -
Cla09g02164 1274 Gene3D - 1026 1233 - -
Cla09g02164 1274 Gene3D - 6 343 IPR015943 GO:0005515
Cla09g02164 1274 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 1029 1224 IPR002699 GO:0046961
Cla09g02164 1274 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 81 - -
Cla09g02164 1274 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01610 Cla-Chr9:32250671 Cla09g02164 Cla-Chr9:39291240 5.45E-07 dispersed
Cla09g02164 Cla-Chr9:39291240 Cla10g00342 Cla-Chr10:4487236 9.33E-28 dispersed
Cla09g02164 Cla-Chr9:39291240 Cla02g01140 Cla-Chr2:24559273 3.98E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02164 K02433 - csv:101212627 972.615