Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02172 ATGCTCTCTTTTTTAGCTGCAATGCTAATAATATCCATTGTTCTAGTCTTGAGGAGCAATAAGAGAAGCAAAAATATACCACCTGGGCAAATGGGTCTTCCTTGGATTGGCGAAACAATGGCTTTTTACAAAGCCCAACGTAAAAACAGAGTATTTGAAGACTTTGTTAGGCCTCGAGTGGCTAAACATGGCAAAATCTTCAAAACAAGCTTAATGGGATCTCCAACAGTGGTTGTAAATGGAGCTGAAGCCAATCGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTGAGTTCATGGCCATCGGGTTCTGTTCAGTTGATGGGTGAAGAATGCATTATGCAAAAGCAAGGTGAAAGGCACAGAATTGTGCGTGCTCTTATTGCTGCAAGTCTTTCTAGTTCGAGTCTTGAAGTTATGATGCCTAAATTGTGCAATACAATTAAGGTTTATTTGGAAACTAAATGGGTTGGTTGTGACACAATTGGTCTATTCCATTCGGCAAAAGTATTGACTTTTACCATAGTGTTTGAGTGTTTGATGGGTATTAAAGTGGAGCCACGTGTGTTGATGACATTTGAGAGAGTTTTGGAGGGTGTTTTTGTACCACCGCTCAGGTTTTCAAGAGCCAAGAAAGCAAGGTTGGAGATAGAGAAAATGCTAAGGGAAGTGGTGAGAGAGAAGAGGAGGGGAATTGAAGGAAAGTTAGAAGAAGAAGAAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATAAGAGGGGAGATCAATGAAACGGAAGTCATAGACAATGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACTTCCTTTGCCATTGCCATGACTTTCAAGATGTTAGCTCAACATTCAAACTGCTACTCACTTCTTCTCCAGGAACACACTGACATAGTGAGAAGCAAGGGGCCAAGCCAGAATTTGACGATGGAAGATATAAAGAAGATGAAATATACTTGGCAAGTAGCTCGTGAGAGCATTAGACTGTTTCCTCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGATTTTTCATTCCCAAAGGATGGAAGGTGAAAATTTCAATAAATTCTTCTGCTGTTTCTTTACATCAGTTGATATATCCTGCAGTAAATTGTTGTCCAGAAATGACCATCATTTTACCTCGAATCATTTTGGTTGCATGGCAGGTATTGTGGACGACGTATGGAACACATTACGAAGAAGAGTACTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTGGCGAAATTGAACATCCTCATCTTTATACATTTGGTTGTAACTCGTTATGACTGGAGCTTAGTCCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTCTCATGGAATGCCAATTAAGATTTCTCCAAAATCAGAAGTTTGTCCCAATGTTCACCAAATGTAA 1536 40.1 MLSFLAAMLIISIVLVLRSNKRSKNIPPGQMGLPWIGETMAFYKAQRKNRVFEDFVRPRVAKHGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSGSVQLMGEECIMQKQGERHRIVRALIAASLSSSSLEVMMPKLCNTIKVYLETKWVGCDTIGLFHSAKVLTFTIVFECLMGIKVEPRVLMTFERVLEGVFVPPLRFSRAKKARLEIEKMLREVVREKRRGIEGKLEEEEEEECGSLLSRMVRAMIRGEINETEVIDNVVLLVFAAHDTTSFAIAMTFKMLAQHSNCYSLLLQEHTDIVRSKGPSQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYERFFIPKGWKVKISINSSAVSLHQLIYPAVNCCPEMTIILPRIILVAWQVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHLVVTRYDWSLVHPDEPIIMDPLPVPSHGMPIKISPKSEVCPNVHQM 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39376329 39378584 + ClCG09G022360.2 Cla09g02172 281592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02172 511 SUPERFAMILY Cytochrome P450 27 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 Pfam Cytochrome P450 27 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 Pfam Cytochrome P450 405 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 13 370 - -
Cla09g02172 511 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 403 500 - -
Cla09g02172 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Cla09g02172 511 Gene3D Cytochrome P450 16 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS P450 superfamily signature 275 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 Coils Coil 210 242 - -
Cla09g02172 511 PANTHER CYTOCHROME P450 26 13 370 - -
Cla09g02172 511 PANTHER CYTOCHROME P450 26 403 500 - -
Cla09g02172 511 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla09g02172 511 PRINTS E-class P450 group I signature 264 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02172 Cla-Chr9:39376329 Cla05g02039 Cla-Chr5:32102232 2.53E-60 dispersed
Cla09g02172 Cla-Chr9:39376329 Cla05g01495 Cla-Chr5:24133776 2.33E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02172 - - csv:101220115 792.727