Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02191 ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTATGATCCATTCCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAAGCGGCGACGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAAGGCGTTCGACGTGTCGTGCTGTTCATCCGAAGTCATTTCTGCAGTGGACGACAGGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCGTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCAAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCATTCTATGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCACAAGAACTCTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCGGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 879 43.46 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAATLDPALMSFTNFFDTSLDYNSLSKAFDVSCCSSEVISAVDDRSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39506007 39507831 + ClCG09G022500.2 Cla09g02191 281611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02191 292 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 14 290 - -
Cla09g02191 292 MobiDBLite consensus disorder prediction 74 139 - -
Cla09g02191 292 SMART WRKY_cls 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla09g02191 292 Gene3D WRKY domain 136 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla09g02191 292 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla09g02191 292 MobiDBLite consensus disorder prediction 81 100 - -
Cla09g02191 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 290 IPR044810 GO:0003700
Cla09g02191 292 MobiDBLite consensus disorder prediction 101 139 - -
Cla09g02191 292 Pfam WRKY DNA -binding domain 153 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla09g02191 292 SUPERFAMILY WRKY DNA-binding domain 145 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02377 Cla-Chr1:37466720 Cla09g02191 Cla-Chr9:39506007 8.49E-59 dispersed
Cla09g00458 Cla-Chr9:4387274 Cla09g02191 Cla-Chr9:39506007 3.23E-41 dispersed
Cla09g02191 Cla-Chr9:39506007 Cla10g01103 Cla-Chr10:25306121 1.60E-40 dispersed
Cla10g01231 Cla-Chr10:27030352 Cla09g02191 Cla-Chr9:39506007 1.12E-20 dispersed
Cla08g01030 Cla-Chr8:23025947 Cla09g02191 Cla-Chr9:39506007 3.24E-48 transposed
Cla02g01802 Cla-Chr2:33057673 Cla09g02191 Cla-Chr9:39506007 7.81E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61794 PF03106 WRKY 5.40E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02191 - - csv:101211248 508.064