Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g02192 | ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCAATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCCTATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGCGCTAGCATGGAGTAGAAAGCTTTTAAAAGGATTGAAATTGGCTTGGAGAATTTTTTCCAATGTGAAGAATGAGCAATTGGATGACTGA | 1587 | 43.73 | MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPALAWSRKLLKGLKLAWRIFSNVKNEQLDD | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39516751 | 39521363 | - | ClCG09G022510.2 | Cla09g02192 | 281612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g02192 | 528 | Coils | Coil | 214 | 234 | - | - | |
Cla09g02192 | 528 | SUPERFAMILY | Protein kinase-like (PK-like) | 178 | 471 | IPR011009 | - | |
Cla09g02192 | 528 | ProSitePatterns | Protein kinases ATP-binding region signature. | 200 | 223 | IPR017441 | GO:0005524 | |
Cla09g02192 | 528 | SMART | serkin_6 | 194 | 465 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla09g02192 | 528 | Gene3D | Phosphorylase Kinase; domain 1 | 176 | 269 | - | - | |
Cla09g02192 | 528 | CDD | STKc_IRAK | 200 | 466 | - | - | |
Cla09g02192 | 528 | Gene3D | Transferase(Phosphotransferase) domain 1 | 270 | 484 | - | - | |
Cla09g02192 | 528 | ProSiteProfiles | Protein kinase domain profile. | 194 | 452 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla09g02192 | 528 | PANTHER | OS01G0323000 PROTEIN | 5 | 496 | - | - | |
Cla09g02192 | 528 | MobiDBLite | consensus disorder prediction | 469 | 498 | - | - | |
Cla09g02192 | 528 | PANTHER | OS10G0497600 PROTEIN | 5 | 496 | - | - | |
Cla09g02192 | 528 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 316 | 328 | IPR008271 | GO:0004672|GO:0006468 | |
Cla09g02192 | 528 | Pfam | Protein kinase domain | 197 | 463 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00395 | Cla-Chr6:4846508 | Cla09g02192 | Cla-Chr9:39516751 | 0 | dispersed | |
Cla08g01583 | Cla-Chr8:28504183 | Cla09g02192 | Cla-Chr9:39516751 | 1.39E-163 | dispersed | |
Cla09g02192 | Cla-Chr9:39516751 | Cla11g00221 | Cla-Chr11:2548037 | 2.23E-93 | dispersed | |
Cla08g00888 | Cla-Chr8:21363945 | Cla09g02192 | Cla-Chr9:39516751 | 2.73E-72 | transposed | |
Cla02g01803 | Cla-Chr2:33065120 | Cla09g02192 | Cla-Chr9:39516751 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80832 | PF00069 | Pkinase | 7.20E-48 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g02192 | - | - | csv:101212378 | 978.778 |