Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02192 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCAATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCCTATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGCGCTAGCATGGAGTAGAAAGCTTTTAAAAGGATTGAAATTGGCTTGGAGAATTTTTTCCAATGTGAAGAATGAGCAATTGGATGACTGA 1587 43.73 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPALAWSRKLLKGLKLAWRIFSNVKNEQLDD 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39516751 39521363 - ClCG09G022510.2 Cla09g02192 281612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02192 528 Coils Coil 214 234 - -
Cla09g02192 528 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Cla09g02192 528 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Cla09g02192 528 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g02192 528 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Cla09g02192 528 CDD STKc_IRAK 200 466 - -
Cla09g02192 528 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Cla09g02192 528 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g02192 528 PANTHER OS01G0323000 PROTEIN 5 496 - -
Cla09g02192 528 MobiDBLite consensus disorder prediction 469 498 - -
Cla09g02192 528 PANTHER OS10G0497600 PROTEIN 5 496 - -
Cla09g02192 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Cla09g02192 528 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00395 Cla-Chr6:4846508 Cla09g02192 Cla-Chr9:39516751 0 dispersed
Cla08g01583 Cla-Chr8:28504183 Cla09g02192 Cla-Chr9:39516751 1.39E-163 dispersed
Cla09g02192 Cla-Chr9:39516751 Cla11g00221 Cla-Chr11:2548037 2.23E-93 dispersed
Cla08g00888 Cla-Chr8:21363945 Cla09g02192 Cla-Chr9:39516751 2.73E-72 transposed
Cla02g01803 Cla-Chr2:33065120 Cla09g02192 Cla-Chr9:39516751 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80832 PF00069 Pkinase 7.20E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02192 - - csv:101212378 978.778