Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g02200 | ATGGCCGCGTCAGAGATGATGATGAAAAAGGGTGGTAGTGGACCACCGCCTTGCGCTGCTTGCAAGCTTCTGCGCCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCCTATTTCCCTTCCGATCAGCCTCACAAATTCTCAAGTGTTCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCATCAAAGGAGTGATGCTGTGAGTTCAATGGTATACGAGGCAAATGCAAGGATTCGAGATCCGGTATACGGATGCGTGGGAACGATATCGTGTCTACAACGGGAAGTAGATGCATTGCAACAACAACTAGCAATGACACAGGCCCAGCTAGTTCAATTGAAAATGGGCCAATTTGCATCAACATCACAAGCATCATCTAGTACGGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGGCGCATCACCATCCTTGTGGTCTTGCTAG | 471 | 49.89 | MAASEMMMKKGGSGPPPCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQREVDALQQQLAMTQAQLVQLKMGQFASTSQASSSTDDLLPPPPNINVGASPSLWSC | 156 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39611639 | 39614065 | + | ClCG09G022590.1 | Cla09g02200 | 281620 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g02200 | 156 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 134 | - | - | |
| Cla09g02200 | 156 | MobiDBLite | consensus disorder prediction | 131 | 156 | - | - | |
| Cla09g02200 | 156 | Coils | Coil | 96 | 123 | - | - | |
| Cla09g02200 | 156 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
| Cla09g02200 | 156 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
| Cla09g02200 | 156 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 9 | 134 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00888 | Cla-Chr1:11254759 | Cla09g02200 | Cla-Chr9:39611639 | 1.59E-62 | dispersed | |
| Cla02g01885 | Cla-Chr2:34042827 | Cla09g02200 | Cla-Chr9:39611639 | 1.06E-56 | dispersed | |
| Cla05g02297 | Cla-Chr5:34577729 | Cla09g02200 | Cla-Chr9:39611639 | 1.86E-09 | dispersed | |
| Cla07g00427 | Cla-Chr7:5704730 | Cla09g02200 | Cla-Chr9:39611639 | 6.44E-54 | dispersed | |
| Cla09g02200 | Cla-Chr9:39611639 | Cla10g01326 | Cla-Chr10:28218498 | 4.78E-49 | dispersed | |
| Cla11g01084 | Cla-Chr11:21962719 | Cla09g02200 | Cla-Chr9:39611639 | 4.29E-45 | dispersed | |
| Cla02g01814 | Cla-Chr2:33227293 | Cla09g02200 | Cla-Chr9:39611639 | 3.65E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61796 | PF03195 | LOB | 1.80E-43 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g02200 | - | - | csv:101213100 | 254.218 |