Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g02227 | ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGATACTCGTTAA | 1179 | 49.28 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFDTR | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39854007 | 39856739 | + | ClCG09G022860.2 | Cla09g02227 | 281647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g02227 | 392 | MobiDBLite | consensus disorder prediction | 343 | 360 | - | - | |
Cla09g02227 | 392 | Pfam | MYB-CC type transfactor, LHEQLE motif | 132 | 177 | IPR025756 | - | |
Cla09g02227 | 392 | MobiDBLite | consensus disorder prediction | 323 | 392 | - | - | |
Cla09g02227 | 392 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Cla09g02227 | 392 | MobiDBLite | consensus disorder prediction | 258 | 277 | - | - | |
Cla09g02227 | 392 | MobiDBLite | consensus disorder prediction | 323 | 342 | - | - | |
Cla09g02227 | 392 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cla09g02227 | 392 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677 | |
Cla09g02227 | 392 | Gene3D | - | 31 | 89 | - | - | |
Cla09g02227 | 392 | MobiDBLite | consensus disorder prediction | 376 | 392 | - | - | |
Cla09g02227 | 392 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 293 | IPR044848 | GO:0003700 | |
Cla09g02227 | 392 | Pfam | Myb-like DNA-binding domain | 35 | 83 | IPR001005 | - | |
Cla09g02227 | 392 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 293 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02051 | Cla-Chr1:35013406 | Cla09g02227 | Cla-Chr9:39854007 | 2.43E-46 | dispersed | |
Cla09g02227 | Cla-Chr9:39854007 | Cla11g00689 | Cla-Chr11:8061773 | 1.51E-52 | dispersed | |
Cla05g00348 | Cla-Chr5:3139401 | Cla09g02227 | Cla-Chr9:39854007 | 6.80E-15 | transposed | |
Cla07g00216 | Cla-Chr7:2352358 | Cla09g02227 | Cla-Chr9:39854007 | 9.10E-50 | transposed | |
Cla10g01268 | Cla-Chr10:27482619 | Cla09g02227 | Cla-Chr9:39854007 | 1.90E-57 | transposed | |
Cla02g01833 | Cla-Chr2:33478656 | Cla09g02227 | Cla-Chr9:39854007 | 2.33E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61798 | PF00249 | Myb_DNA-binding | 2.20E-06 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g02227 | - | - | csv:101217821 | 721.85 |