Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g02227 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGATACTCGTTAA 1179 49.28 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFDTR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39854007 39856739 + ClCG09G022860.2 Cla09g02227 281647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g02227 392 MobiDBLite consensus disorder prediction 343 360 - -
Cla09g02227 392 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cla09g02227 392 MobiDBLite consensus disorder prediction 323 392 - -
Cla09g02227 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cla09g02227 392 MobiDBLite consensus disorder prediction 258 277 - -
Cla09g02227 392 MobiDBLite consensus disorder prediction 323 342 - -
Cla09g02227 392 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cla09g02227 392 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Cla09g02227 392 Gene3D - 31 89 - -
Cla09g02227 392 MobiDBLite consensus disorder prediction 376 392 - -
Cla09g02227 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 293 IPR044848 GO:0003700
Cla09g02227 392 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Cla09g02227 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02051 Cla-Chr1:35013406 Cla09g02227 Cla-Chr9:39854007 2.43E-46 dispersed
Cla09g02227 Cla-Chr9:39854007 Cla11g00689 Cla-Chr11:8061773 1.51E-52 dispersed
Cla05g00348 Cla-Chr5:3139401 Cla09g02227 Cla-Chr9:39854007 6.80E-15 transposed
Cla07g00216 Cla-Chr7:2352358 Cla09g02227 Cla-Chr9:39854007 9.10E-50 transposed
Cla10g01268 Cla-Chr10:27482619 Cla09g02227 Cla-Chr9:39854007 1.90E-57 transposed
Cla02g01833 Cla-Chr2:33478656 Cla09g02227 Cla-Chr9:39854007 2.33E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61798 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g02227 - - csv:101217821 721.85