Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00004 ATGGCCAAATTAACCGCAAAACGCCTTCTTCAGTTTTGGTGCTTCTTCATCCTCTTGTTTCCCATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCGCCTCCCAATTTTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGAGCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTACTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCACCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCTGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCACTTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTTACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1527 47.28 MAKLTAKRLLQFWCFFILLFPMLSATSPPDLVKIECLTVPASQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYELLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATTISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVTWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 132994 135786 + ClCG10G000050.1 Cla10g00004 281663
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00004 508 SUPERFAMILY Pectin lyase-like 192 504 IPR011050 -
Cla10g00004 508 Gene3D - 191 507 IPR012334 -
Cla10g00004 508 CDD PMEI-like_4 14 167 - -
Cla10g00004 508 Pfam Plant invertase/pectin methylesterase inhibitor 75 162 IPR006501 GO:0004857
Cla10g00004 508 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 164 IPR035513 -
Cla10g00004 508 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 169 IPR035513 -
Cla10g00004 508 PANTHER PECTINESTERASE 171 505 - -
Cla10g00004 508 PANTHER PECTINESTERASE 38 165 - -
Cla10g00004 508 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 38 165 - -
Cla10g00004 508 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 171 505 - -
Cla10g00004 508 Pfam Pectinesterase 194 491 IPR000070 GO:0030599|GO:0042545
Cla10g00004 508 SMART PMEI_2 27 166 IPR006501 GO:0004857
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01644 Cla-Chr3:32333112 Cla10g00004 Cla-Chr10:132994 4.41E-155 dispersed
Cla09g00512 Cla-Chr9:4846710 Cla10g00004 Cla-Chr10:132994 1.39E-162 dispersed
Cla10g00004 Cla-Chr10:132994 Cla01g00045 Cla-Chr1:336726 4.22E-151 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00004 K01051 - csv:101207185 909.057