Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00006 ATGACCTTTGACATGGCTCAGAGTGCTAGGACAATGGGTTCTTCCTTTAACTCCAGCAGTGGCAATGATGATACTCTCCTTCAAAGCTTTGCTGCTTCTTCAAATGGGGACGATTATGACAGTGATGGCTCCAATTTTGCACCCCCTACTCCTACAACCATATCCACGGCAATTCCTGCAGAACTTGCTGGTGTCATACCTTTGATTGACAGATTCCAGGTCGAAGGATTCTTAAGGATGATGCACAAACAAATCCATTCTTCTGGAAAACGTGGATTCTTTTCCAAAAGATCTGTAGGTCCTCAAGTTCGGGAAAAATTCACATTTGAGGATATGTTGTGTTTCCAAAAGGATCCTATACCAACTTCATTACTTAAAATTAACTCTGACCTGGTGAGCCGGGCCATAAAACTATTCCAAATAATCTTGAAGTACATAGGTGTTGACTCTTCTGATAGAGTTATTGCAACAAGCTTAGACGAACGAATTGAGCTTGTTGGAAAACTATACAAGCACACATTGAAACGTTCAGAGCTACGAGATGAACTTTTTATCCAAATCTCTAAGCAAACTAGAAATTCTCCTGATAGGCAATATTTAATCAAAGCATGGGAGCTGATGTATTTATGTGCATCTGCTATGCCTCCTAGCAAGGATATTGGTGGATATCTGTCAGAGTATGTTCATAATGTTGCCCAAGGCATAAGTACTGATCCGGAGGTTCGAGTTCTTGCATTAAATACACTGAATGCTTTGAAGCGTTGCATGAAGGCTGGTCCCAGGCATATAATACCAGGTCGCGAGGAAGTCGAAGCTCTTTTAACAGGCCGAAAACTTACAACTATAGTATTTTTCTTGGATGAAACTTTTGAAGAAATCACATATGATATGACAACAACAGTGGCTGATTCTGTTGAGGAACTTTCAGGTGTTATAAAACTGTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGCTCGTTAGTGGGGCTAAAGCACTTGATCTAGGGAATGAGGAGTATGTTGGGCTTGATGATAACAAATATATTGGAGATCTGTTAGCAGAATTCAAGGCAGCAAAAGATCGAAGCAAAGGAGAAATTCTGCACTTCAAGTTGACATTTAAAAAGAAGCTGTTTCGGGAGTCTGATGAAGCTGTAGCGGACCCAATGTTTATACAACTGTCATATGTTCAGCTGCAGCATGACTATTTGTTGGGAAATTATCCTGTTGGAAGGGATGATGCTGCACAGCTTTCAGCACTACAAATCCTTGTTGAAATTGGATTTATTACCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTAGAAAGATTTGTACCCAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTTTCGTTCAATGGAGCATTTGACGAAGGATGACGCGAGACAACAATTTCTTCGAATATTGAGAACACTTCCTTATGGGAATTCAGTTTTCTTCGGCGTCCGCAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGCATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAGTTCGGTAGCAGTAACACTGCGGTTTTTTTTAAGATGAGAGTTGCTGGCGTTCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTGCAGACACACATAAATGATGTCATGTTGCGTCGTTACTCTAAAGCTAGATCTGCTGCTGTTGGTTCCATGCATGGAGATTCTTCCGGCAACTTAAAGATTCAAAGTGTGGAAGCATATGAGAAACGAGTTCAAGATTTGAGTAAGGGCATTGAAGAGTCTAAGAGAAATGCTGAACAGTTGCTGAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTAATGCAAGAAGAATTGGAAACCCTAAAAGAATCATTGAGATTTGAAAAGCACAACTTAGCTGAGGCAACACGTAGTCTTGAGAGGCTGAGATTGCAGTATGATGAAAAAGACAAGGAACACCAGGACATGCTAATCGAAAAAAGGGGTATGGAAGCAAAAATAGCAAAATTGAGCACCACGGTGTTGGAAAATAACGGGAAAAAAGATACAGTTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGCTTCGAAATGATGAGTTGCAAGCCACTGAAGAAATTAGAAAGAAACTGGTAAATGAAAAGATGTTCCTGGAACAAAGAATTTTTGGACTTGAGAAGAAGACTAGCGATGAGATGGAACATCTCCAGAGAAGCTTTGAACATGAACGCAAAGTCTTGAAGCTGAGAGTGGCAGAACTTGAAAAAAAACTTGAAGAAGTAACTCAAGAACTAGCTGCCATGGAGTCAACTCTCACAATCAGGAACTCTGATTTGGCGGCACTGCAAAATAATTTGAAGGAACTAGAGGAACTACGAGAGATGAAAGAGGACATTGACCGAAAAAATGAGCAAACAGCCAAGATTTTGAAGATGCAAGGGGCTCAGCTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAGTTCTAAGGAAACGCTATTTCAACATGATAGAGGATATGAAAGGAAAAATTAGAGTTTACTGTCGACTTCGACCTCTTAATGATAAAGAAATTATTGAAAGAGAAAAAAATGTGCTTACAAGTCTAGATGAGTTCACAGTCGAACATCTTTGGAAAGATGATAAGCTGAAGCAACATATGTACGATCGTGTATTTGATGGCACTGCCTCCCAGGAGGATGTTTTTGAAGATACGCGGTATCTTGTCCAGTCTGCTGTAGATGGTTATAATGTATGCATATTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACAATATATGGATCTGAGGACCACCCTGGACTAACACCACGTGCCATTGGAGAACTTTTTAGGATTTTGAAGCGGGATAGTAACAAGTTCTCGTTCTCATTGAAGGCATACATGCTAGAATTATATCAAGATACATTGGTAGATCTTCTTTTGCCAAGGAATGCAAAACGATTGAGATTAGAGATAAAAAAGGATACAAAGGGAATGGTATCCATTGAAAACATCACAATAGCTTCTATTTCAACATTTGAAGAATTGAAAAATATTATTTATAGAGGATTGGAGCAACGACATACTTCAGAGACTCAGATGAACGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTATTATTGAAAGTACCAACCTTCAGACACAATCTGTTTCTAAAGGAAAGCTTAGTTTTGTTGATCTTGCGGGATCAGAGAGAGTGAAGAAATCAGGCTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCACTTGGGGATGTTATCAGTGCTTTGTTTTTAGGGGGCCAGCACATACCTTACAGAAATCATAAGCTAACAATGTTGATGAGTGATTCACTCGGTGGTAATGCCAAAACGCTTATGTTTGTCAATGTCTCTCCGGCTGAATCCAACTTGGACGAGACATACAATTCACTCATGTATGCATCAAGAGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTAGCATCTAAGGAGGTTGCTCGACTGAAAAAAATGGTCGCTTATTGGAAAGAACAAGCAGGTAGGAGGGGAGAGGATGAGGAGTTGGAAGAAATCCAAGACGAGCGACATACTAAAGAAAAGGGAGACGTTAGATATTCGATGTAG 3798 39.84 MTFDMAQSARTMGSSFNSSSGNDDTLLQSFAASSNGDDYDSDGSNFAPPTPTTISTAIPAELAGVIPLIDRFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYIGVDSSDRVIATSLDERIELVGKLYKHTLKRSELRDELFIQISKQTRNSPDRQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHNVAQGISTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEVEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGVIKLSAHSSFSLFECRKLVSGAKALDLGNEEYVGLDDNKYIGDLLAEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMHGDSSGNLKIQSVEAYEKRVQDLSKGIEESKRNAEQLLKELHEKNKQEVVMQEELETLKESLRFEKHNLAEATRSLERLRLQYDEKDKEHQDMLIEKRGMEAKIAKLSTTVLENNGKKDTVGIDEQLLQKLQDELRLRNDELQATEEIRKKLVNEKMFLEQRIFGLEKKTSDEMEHLQRSFEHERKVLKLRVAELEKKLEEVTQELAAMESTLTIRNSDLAALQNNLKELEELREMKEDIDRKNEQTAKILKMQGAQLAEMEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNDKEIIEREKNVLTSLDEFTVEHLWKDDKLKQHMYDRVFDGTASQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDHPGLTPRAIGELFRILKRDSNKFSFSLKAYMLELYQDTLVDLLLPRNAKRLRLEIKKDTKGMVSIENITIASISTFEELKNIIYRGLEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALFLGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSKNVASKEVARLKKMVAYWKEQAGRRGEDEELEEIQDERHTKEKGDVRYSM 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 149122 169354 + ClCG10G000070.2 Cla10g00006 281665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00006 1265 CDD KISc_C_terminal 887 1212 - -
Cla10g00006 1265 SUPERFAMILY Prismane protein-like 832 893 IPR011254 GO:0003824|GO:0016491
Cla10g00006 1265 Gene3D - 1213 1261 - -
Cla10g00006 1265 ProSitePatterns Kinesin motor domain signature. 1110 1121 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla10g00006 1265 PANTHER KINESIN-LIKE PROTEIN KLP-3 65 1241 - -
Cla10g00006 1265 Gene3D - 278 382 - -
Cla10g00006 1265 SUPERFAMILY PH domain-like 499 587 - -
Cla10g00006 1265 MobiDBLite consensus disorder prediction 1236 1265 - -
Cla10g00006 1265 Pfam FERM central domain 385 499 IPR019748 -
Cla10g00006 1265 Coils Coil 732 773 - -
Cla10g00006 1265 Coils Coil 782 854 - -
Cla10g00006 1265 Gene3D - 391 492 IPR014352 -
Cla10g00006 1265 Gene3D Kinesin motor domain 832 1211 IPR036961 -
Cla10g00006 1265 SMART B41_5 275 499 IPR019749 -
Cla10g00006 1265 ProSiteProfiles MyTH4 domain profile. 115 274 IPR000857 GO:0005856
Cla10g00006 1265 CDD FERM_C_KCBP 496 602 - -
Cla10g00006 1265 SMART kinesin_4 887 1218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 Gene3D MyTH4 domain 94 276 IPR038185 -
Cla10g00006 1265 SUPERFAMILY Second domain of FERM 377 494 IPR035963 -
Cla10g00006 1265 ProSiteProfiles Kinesin motor domain profile. 889 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1238 IPR027417 -
Cla10g00006 1265 Pfam Kinesin motor domain 895 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 Gene3D - 497 604 IPR011993 -
Cla10g00006 1265 PRINTS Kinesin heavy chain signature 961 982 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 PRINTS Kinesin heavy chain signature 1160 1181 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 PRINTS Kinesin heavy chain signature 1111 1129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 PRINTS Kinesin heavy chain signature 1080 1097 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00006 1265 ProSiteProfiles FERM domain profile. 279 593 IPR000299 GO:0005856
Cla10g00006 1265 Pfam MyTH4 domain 168 272 IPR000857 GO:0005856
Cla10g00006 1265 CDD FERM_B-lobe 394 492 IPR019748 -
Cla10g00006 1265 SMART MyTH4_1 115 274 IPR000857 GO:0005856
Cla10g00006 1265 Coils Coil 617 700 - -
Cla10g00006 1265 PANTHER KINESIN-LIKE PROTEIN 65 1241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00006 Cla-Chr10:149122 Cla10g01064 Cla-Chr10:24658542 8.88E-74 dispersed
Cla10g00006 Cla-Chr10:149122 Cla03g00482 Cla-Chr3:5344976 1.59E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00006 - - csv:101206704 2281.91