Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00008 CCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACGGGAGAAGAAGAGGAACGCTGACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGCAAATGTGCATGCTATTTTGTTTACTTGATTCTCTTGATAGGGGAGGGCGGGAGATTCGAATCCTAGGTTGTAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAAGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1929 44.48 PSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDGRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSRQMCMLFCLLDSLDRGGREIRILGCRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 185370 208414 + ClCG10G000090.1 Cla10g00008 281667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00008 642 MobiDBLite consensus disorder prediction 1 40 - -
Cla10g00008 642 CDD ARID 353 435 - -
Cla10g00008 642 Gene3D - 348 446 IPR036431 GO:0003677
Cla10g00008 642 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 140 640 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 223 299 - -
Cla10g00008 642 Pfam Hsp20/alpha crystallin family 559 639 IPR002068 -
Cla10g00008 642 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g00008 642 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 140 640 IPR045147 GO:0006357
Cla10g00008 642 CDD ACD_sHsps_p23-like 561 637 - -
Cla10g00008 642 Pfam ARID/BRIGHT DNA binding domain 351 435 IPR001606 GO:0003677
Cla10g00008 642 ProSiteProfiles ARID domain profile. 348 439 IPR001606 GO:0003677
Cla10g00008 642 Gene3D - 538 642 IPR008978 -
Cla10g00008 642 MobiDBLite consensus disorder prediction 166 187 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 446 463 - -
Cla10g00008 642 SUPERFAMILY HSP20-like chaperones 553 638 IPR008978 -
Cla10g00008 642 SMART ARID_2 345 435 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 446 469 - -
Cla10g00008 642 SUPERFAMILY ARID-like 342 449 IPR036431 GO:0003677
Cla10g00008 642 SMART bright_3 349 440 IPR001606 GO:0003677
Cla10g00008 642 MobiDBLite consensus disorder prediction 223 243 - -
Cla10g00008 642 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 542 642 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00008 - - - bhj:120091028 937.176
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00008 . 340 610 ARID Transcription Factor Family AT1G20910 61.4 1.5e-91 333.6
Cla05g01592 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.6e-111 397.9
Cla09g01192 . 228 497 ARID Transcription Factor Family AT1G76110 58.2 7.7e-84 307.8
Cla10g00008 . 319 640 ARID Transcription Factor Family AT1G76510 60.2 1.8e-109 393.3
Cla07g01362 . 1 793 ARID Transcription Factor Family AT3G43240 57.5 2.9e-261 898.3
Cla09g00122 . 2 770 ARID Transcription Factor Family AT3G43240 57.9 1.4e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61803 PF00011 HSP20 1.20E-05 CL0190 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00008 Cla_Chr10 FPKM 6.159629 5.854515 15.758551 15.244607 9.77945 9.874565 9.657543 13.541871 12.261337 14.360129