Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00008 CCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACGGGAGAAGAAGAGGAACGCTGACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGCAAATGTGCATGCTATTTTGTTTACTTGATTCTCTTGATAGGGGAGGGCGGGAGATTCGAATCCTAGGTTGTAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAAGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1929 44.48 PSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDGRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSRQMCMLFCLLDSLDRGGREIRILGCRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 185370 208414 + ClCG10G000090.1 Cla10g00008 281667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00008 642 MobiDBLite consensus disorder prediction 1 40 - -
Cla10g00008 642 CDD ARID 353 435 - -
Cla10g00008 642 Gene3D - 348 446 IPR036431 GO:0003677
Cla10g00008 642 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 140 640 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 223 299 - -
Cla10g00008 642 Pfam Hsp20/alpha crystallin family 559 639 IPR002068 -
Cla10g00008 642 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g00008 642 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 140 640 IPR045147 GO:0006357
Cla10g00008 642 CDD ACD_sHsps_p23-like 561 637 - -
Cla10g00008 642 Pfam ARID/BRIGHT DNA binding domain 351 435 IPR001606 GO:0003677
Cla10g00008 642 ProSiteProfiles ARID domain profile. 348 439 IPR001606 GO:0003677
Cla10g00008 642 Gene3D - 538 642 IPR008978 -
Cla10g00008 642 MobiDBLite consensus disorder prediction 166 187 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 446 463 - -
Cla10g00008 642 SUPERFAMILY HSP20-like chaperones 553 638 IPR008978 -
Cla10g00008 642 SMART ARID_2 345 435 - -
Cla10g00008 642 MobiDBLite consensus disorder prediction 446 469 - -
Cla10g00008 642 SUPERFAMILY ARID-like 342 449 IPR036431 GO:0003677
Cla10g00008 642 SMART bright_3 349 440 IPR001606 GO:0003677
Cla10g00008 642 MobiDBLite consensus disorder prediction 223 243 - -
Cla10g00008 642 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 542 642 IPR002068 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61803 PF00011 HSP20 1.20E-05 CL0190 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00008 - - bhj:120091028 937.176