Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00009 ATGCTGATGCGTGATGGGACAGTCAAGTGCAAAAAGGAGCAGCCGGATCGCAAGTATAGAAATGGAGGCCCTGCAATTGCCATTGCCATTGCTAGGGCTTTGGTTCCTTGCTGGATCTCTCTTCATCCAACGGCGAAGAAGATAACAATGTCGTCGAACCATTCGGATTTTGAATCTTCAGCTTTTGATACTCAAACTTCGTCCAATCCGATTGCTCCCTTGGATCATCTTCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCCCTGCACATCATCTTCGCCTTCCTCCACTCCACCTCCGATTCACCTACCTCTCTCTTGGCCTACCGATGCCACCCTTTCCCTCCAATGGATACACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCCAAGACTCAGCCGCCAGCAGCGACTCGACTGTAGTCGTCGTCGGAGACATCCACGGCCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGCTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAGGGTAAGCATGTCTATCGGAAGTGCTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCTAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCCGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCTGGTCTCTCCCCAAATAAAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCAATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCAAAGGTCAATGCATATTACGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGATCCATGA 1533 46.12 MLMRDGTVKCKKEQPDRKYRNGGPAIAIAIARALVPCWISLHPTAKKITMSSNHSDFESSAFDTQTSSNPIAPLDHLPSTSSTLSESEENPCTSSSPSSTPPPIHLPLSWPTDATLSLQWIHHLIAAFDWSSKNLPPSQFPSVLPVSVFDTLILTASKILHKEPNCLRILQDSAASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDLASMATDP 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 193462 208462 - ClCG10G000100.1 Cla10g00009 281668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00009 510 Pfam Calcineurin-like phosphoesterase 180 408 IPR004843 GO:0016787
Cla10g00009 510 CDD MPP_PP7 110 490 IPR041754 -
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 243 267 IPR006186 GO:0016787
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 434 450 IPR006186 GO:0016787
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 210 237 IPR006186 GO:0016787
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 340 367 IPR006186 GO:0016787
Cla10g00009 510 PRINTS Serine/threonine phosphatase family signature 280 306 IPR006186 GO:0016787
Cla10g00009 510 SMART pp2a_7 144 480 IPR006186 GO:0016787
Cla10g00009 510 Gene3D - 138 498 IPR029052 -
Cla10g00009 510 ProSitePatterns Serine/threonine specific protein phosphatases signature. 244 249 IPR006186 GO:0016787
Cla10g00009 510 MobiDBLite consensus disorder prediction 56 95 - -
Cla10g00009 510 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 87 507 - -
Cla10g00009 510 MobiDBLite consensus disorder prediction 56 106 - -
Cla10g00009 510 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 87 507 - -
Cla10g00009 510 SUPERFAMILY Metallo-dependent phosphatases 141 482 IPR029052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01946 Cla-Chr9:37044124 Cla10g00009 Cla-Chr10:193462 1.32E-134 dispersed
Cla10g00009 Cla-Chr10:193462 Cla09g02166 Cla-Chr9:39317650 6.72E-52 dispersed
Cla10g00009 Cla-Chr10:193462 Cla02g01790 Cla-Chr2:32917161 1.72E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00009 K04460 - csv:116402529 820.076