Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00012 | ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCACCGCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGACATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA | 546 | 58.42 | MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 234225 | 234770 | - | ClCG10G000130.1 | Cla10g00012 | 281671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00012 | 181 | Pfam | Ring finger domain | 95 | 138 | IPR001841 | - | |
Cla10g00012 | 181 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 142 | IPR013083 | - | |
Cla10g00012 | 181 | SMART | FANCL_C_2 | 92 | 146 | - | - | |
Cla10g00012 | 181 | MobiDBLite | consensus disorder prediction | 160 | 181 | - | - | |
Cla10g00012 | 181 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 138 | IPR001841 | - | |
Cla10g00012 | 181 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 1 | 168 | - | - | |
Cla10g00012 | 181 | SMART | ring_2 | 96 | 137 | IPR001841 | - | |
Cla10g00012 | 181 | SUPERFAMILY | RING/U-box | 76 | 144 | - | - | |
Cla10g00012 | 181 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 1 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g00012 | Cla-Chr10:234225 | Cla11g01841 | Cla-Chr11:32014194 | 1.28E-56 | dispersed | |
Cla10g00012 | Cla-Chr10:234225 | Cla11g00545 | Cla-Chr11:6187381 | 1.27E-33 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00012 | - | - | csv:116402645 | 300.827 |