Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00012 ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCACCGCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGACATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA 546 58.42 MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 234225 234770 - ClCG10G000130.1 Cla10g00012 281671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00012 181 Pfam Ring finger domain 95 138 IPR001841 -
Cla10g00012 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Cla10g00012 181 SMART FANCL_C_2 92 146 - -
Cla10g00012 181 MobiDBLite consensus disorder prediction 160 181 - -
Cla10g00012 181 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Cla10g00012 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 168 - -
Cla10g00012 181 SMART ring_2 96 137 IPR001841 -
Cla10g00012 181 SUPERFAMILY RING/U-box 76 144 - -
Cla10g00012 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00012 Cla-Chr10:234225 Cla11g01841 Cla-Chr11:32014194 1.28E-56 dispersed
Cla10g00012 Cla-Chr10:234225 Cla11g00545 Cla-Chr11:6187381 1.27E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00012 - - csv:116402645 300.827