Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00044 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACGCATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCTGGAAGTACGGTGTTGAAGATAGGGACAGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTCTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGATAAATTATCTGGTGCCCTTCAAGAGGGGACACCACTGAACGCACATGAGGAGCTTAGCCAGAGTTGCAATGGTGCTGCTTTGAAGGAGCAATCTTCAACAATCAGACTCTTCACCGTATCCGTTCAGAAGCTGGCGAGCACGAACCCGAACCTGCAAACGAACCAATGCATGCATGAACTGAAGAGCTATGCGTGCCTGCCTCCTCGCGCACACCCCTCGAGCCAGCGCTTGCAGCTTCACCAAGCTTCTTAG 1848 44.48 MPIEDDVESCGSRATDSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGWKYGVEDRDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSGALQEGTPLNAHEELSQSCNGAALKEQSSTIRLFTVSVQKLASTNPNLQTNQCMHELKSYACLPPRAHPSSQRLQLHQAS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 506616 514881 - ClCG10G000430.1 Cla10g00044 281703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00044 615 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 430 - -
Cla10g00044 615 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 431 532 - -
Cla10g00044 615 Gene3D Transferase(Phosphotransferase) domain 1 432 554 - -
Cla10g00044 615 Gene3D Transferase(Phosphotransferase) domain 1 376 431 - -
Cla10g00044 615 MobiDBLite consensus disorder prediction 1 27 - -
Cla10g00044 615 Coils Coil 511 531 - -
Cla10g00044 615 CDD ACT_TyrKc 182 249 - -
Cla10g00044 615 SUPERFAMILY Protein kinase-like (PK-like) 275 514 IPR011009 -
Cla10g00044 615 SUPERFAMILY ACT-like 182 247 IPR045865 -
Cla10g00044 615 Coils Coil 234 254 - -
Cla10g00044 615 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Cla10g00044 615 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 430 - -
Cla10g00044 615 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 431 532 - -
Cla10g00044 615 SMART serkin_6 297 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00044 615 ProSiteProfiles Protein kinase domain profile. 297 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00044 615 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Cla10g00044 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Cla10g00044 615 CDD STKc_MAP3K-like 303 514 - -
Cla10g00044 615 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cla10g00044 615 Pfam Protein tyrosine and serine/threonine kinase 297 432 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00400 Cla-Chr2:3896275 Cla10g00044 Cla-Chr10:506616 0 dispersed
Cla05g01594 Cla-Chr5:27021993 Cla10g00044 Cla-Chr10:506616 0 dispersed
Cla05g01732 Cla-Chr5:29135626 Cla10g00044 Cla-Chr10:506616 7.75E-17 dispersed
Cla08g00702 Cla-Chr8:19267285 Cla10g00044 Cla-Chr10:506616 1.51E-116 dispersed
Cla10g00044 Cla-Chr10:506616 Cla01g02105 Cla-Chr1:35335976 6.09E-61 dispersed
Cla10g00044 Cla-Chr10:506616 Cla01g01294 Cla-Chr1:26249281 1.42E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80835 PF07714 PK_Tyr_Ser-Thr 2.00E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00044 - - csv:101220844 1030.01