Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00050 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGATGTCATTGCTAGCCTCCTCAGTGGACGTCTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTTCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGTTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 44.92 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSSKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 555246 557281 + ClCG10G000480.1 Cla10g00050 281709
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00050 235 SUPERFAMILY RING/U-box 176 235 - -
Cla10g00050 235 Pfam Ring finger domain 190 232 IPR001841 -
Cla10g00050 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Cla10g00050 235 SMART ring_2 190 231 IPR001841 -
Cla10g00050 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 9 235 - -
Cla10g00050 235 CDD RING-H2_PA-TM-RING 189 232 - -
Cla10g00050 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cla10g00050 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Cla10g00050 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00050 Cla-Chr10:555246 Cla05g00961 Cla-Chr5:9603694 8.62E-15 dispersed
Cla10g00050 Cla-Chr10:555246 Cla05g00312 Cla-Chr5:2869983 1.54E-16 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00050 - - csv:101220376 457.988