Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00072 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTTGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAGGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCTCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATTTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTTAGTCTCTTTTAA 897 52.17 MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRGIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFFSLF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 750528 753520 - ClCG10G000700.2 Cla10g00072 281731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00072 298 CDD TLP-PA 25 247 - -
Cla10g00072 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cla10g00072 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
Cla10g00072 298 PANTHER OS03G0233200 PROTEIN 4 263 IPR001938 -
Cla10g00072 298 PANTHER OS09G0536300 PROTEIN 4 263 - -
Cla10g00072 298 Pfam Thaumatin family 30 248 IPR001938 -
Cla10g00072 298 Gene3D Thaumatin 24 248 IPR037176 -
Cla10g00072 298 PIRSF PR5 1 292 IPR001938 -
Cla10g00072 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cla10g00072 298 SMART tha2 26 248 IPR001938 -
Cla10g00072 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cla10g00072 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cla10g00072 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cla10g00072 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01417 Cla-Chr8:27043614 Cla10g00072 Cla-Chr10:750528 4.00E-112 dispersed
Cla10g00071 Cla-Chr10:737763 Cla10g00072 Cla-Chr10:750528 6.57E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00072 - - csv:101216818 536.184