Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00082 ATGGTGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGGTCAGCCTTTCTTGCAAAATCAAATTATTCCATGTGGTTGTTTTGCTCGTTACGGTTATGCATATATGTTTATTATGTCAATACGAGCATAGCTCAACTAAAATAAAACTTCTACTATCGAACTTAAGGTTAGCAAAAAAAAAAAAAGGAAAAAAAAAACATATCTTAGGAATTATTTGCATCTTTCTCCGATCATCATGTGGACTGAAACAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTAATTTTGAAGACATGAGCTGTGAGATGATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTATCCAACCAACCTTGCTACAAAGATATATGTTCCATGGCAAATCCTAGTACTCCTTTATGTCCTAAATTACAAGCTTAA 990 39.7 MVLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSMLPPGAPAQVSLSCKIKLFHVVVLLVTVMHICLLCQYEHSSTKIKLLLSNLRLAKKKKGKKKHILGIICIFLRSSCGLKQKLMLAVQEIVPTNKMELRIQCLTNSAILSMVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANPSTPLCPKLQA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 801410 806170 - ClCG10G000790.2 Cla10g00082 281741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00082 329 PANTHER BETA-CAROTENE ISOMERASE D27 224 329 IPR038938 -
Cla10g00082 329 PANTHER BETA-CAROTENE ISOMERASE D27 18 125 IPR038938 -
Cla10g00082 329 PANTHER BNAC09G11560D PROTEIN 224 329 - -
Cla10g00082 329 PANTHER BNAC09G11560D PROTEIN 18 125 - -
Cla10g00082 329 Pfam Beta-carotene isomerase D27-like, C-terminal 227 301 IPR025114 GO:0005506
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00082 - - - csv:101210861 225.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00052 Cla-Chr7:576449 Cla10g00082 Cla-Chr10:801410 7.56E-29 dispersed
Cla09g00463 Cla-Chr9:4460311 Cla10g00082 Cla-Chr10:801410 7.03E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g245 . . . . . . . . Cmo06g00586 . . . . . . . . . . . . . . . Cla10g00082 Cam10g0079 Cec10g0082 Cco10g0086 Clacu10g0080 Cmu10g0927 Cre10g0342 . . . . . . . Cme06g02388 . . . . . . . . . . . Cma06g00582 . Car06g00516 . Cpe08g00917 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012818 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00082 Cla_Chr10 FPKM 17.217167 18.318945 46.037273 49.567326 41.401875 45.180737 44.644402 44.819901 47.027264 46.970921