Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00086 ATGTCGCCTACTCCCGAGGAACCTAATAATTTGCAGAACGGAATCGAAACCCAACCATACATTTCGCCAGAATCAGATCAGACTAGTGAACCCAGATCAGAGCCAGAACCCACAGCAGATGCAATTCCCAGTTCTGAATTACAACAAGAACGCGAATCGGAATCAGTTAATAATGGAGTAGCGGATTCGGAGCCGGAGTCTCTAAGGAAACAGTTATCGGAGTCCATCCATTTACAGGTAGTGACGGATGTTACAGATCCGAGGTTTGAAGAGCGCAAAGAAACCTCCATCCCATCCAACGGCAACACGGAGAACTCGCAACCTGCGTTGCGTAAAGACGAAGGAAGCCGGACATTTACAATGAGAGAGTTGCTGAATGGTTTGAAAGGTGAAGATGGTAACGACATCCTTAACGAATCTGAAGGCGAGAGGCCCGAAGGGAACTCTGGCTACAGTCTTAATCAAGATAGCCCACATCAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTGATCAACAGTGTTACAGGCGTCGATGAAGAGGGCCGTTCTCGCCAAAGGATTCTCACATTTGCTGCTAGGAGGTATGCTAGTGCAATTGAGAGAAATGGTCAAGACTATGACGCCCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGACAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAGTATGATGAGGCTACCCGTCTTTGCCCAACACTTCATGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGGGCCAAAATGCGTGGTCGTACAAAGGAGGCCGAAGAACTGTGGAAGCAGGCTACCCAAAATTATGAAAAAGCTGTCCAACTCAACTGGAATAGTCCCCAGGCGCTAAATAATTGGGGGCTTGCTCTACAGGAACTCAGTGCGATTGTGCCAGCACGAGAAAAGCAGACAATTGTGAGAACAGCTATCAGTAAGTTCCGTGCTGCTATACAGTTGCAATTTGATTTTCATCGAGCAATCTACAATCTTGGTACTGTTTTGTATGGATTAGCTGAGGACACATTAAGGACTGGTGGAACGGGAAATGTTAAGGATGTTTCCCCTAATGAGTTATACAGCCAATCAGCAATTTATATTGCAGCTGCTCATGCTCTAAAACCAAATTACTCTGTTTACAGCAGTGCCTTGCGGTTGGTCCGTTCGATGCTGCCGTTACCCTATCTAAAAGTTGGATACCTGACTGCACCTCCTCTGGGGAGACCACTTGCTCCTCACAGTGATTGGAAACGTTCACAATTTTTTCTAAATCATGATGTATTGCAAAAGCTTAACTTAGGAGGGGAGCAAATCCAAACATCCCCTAGTATTTTAGGAAGATCCGGTAGTACCTTGAATGGCGACAGGACAATCAAAGTAGAAATTCCTGATATCGTCTCTGTATCAGCATGTGCAGATCTAACTTTACCACCTGGTGCTGGACTCTGCATTGACACAATCCGCGGACCAGTTTTCTTGGTTGCTGACTCCTGGGACGCGCTTGATGGATGGCTTGATGCAATTAGATTAGTTTACACTATCTATGCTCGAGGCAAGAACGAGGTTTTGGCTGGCATCATAGCAGCGTCTGGCGGAGTCGGAGACAGCAGGCGTCAATGGAGGCTTCAGCGGCGGCGTCTGGCGGAGTCGAAGGCAACAGCGTCGCGTCTGCCGGCGTCGAGCGTCGTCGTCGGGGCGGTTATGGGCAGGATGGGAGGAAGGCAAAGGACTTACACCGCTAATTCCAGTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCGTCAAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCTTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGGCACATACATCGGGATGTCAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCACCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGAGCTGCAGCTTAAGGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTAAATGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCCTTCTGTCCTCAAGCTAGTATGAAGAATTTCAATTCATGTAATGAATCATATCAGGATGAGCATGGAGTAGGGGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAGCAAAAAGGGAAACTCTATGGAAAGTGATATGCTGAAAGCTGGGTTGCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCAATGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAACTGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGCACTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCTGCAAACAGCCTATCAGCTCCAATTAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGTCGATCTTCACAGAACTCTCCTCTACGAAAGTCAGCTAGTGTTGGTGATTGGATATTCGATTCCAAGCAGTCTGTCAGCCAACAACCCCCTAAGGAGGCTTGCAACGTCAACGTGCCTACATCAATTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAGCAGGATCTTATAGTGAACTTGTTGAATAGCTTACAAGCAGCAGACGTGGTTGATGCTTCTCAAAACGGAAAGTTGCCTCCATTGCCCCGAAGCTCGGAGAATAATGGAAGTGCTGAAACAGCTGCCGTTGAGAGAGAGCGCTTACTGCTTCGGAAAGTCTCTGAACTCCAAGCTAGAATGACGCATTTGACTTATGAATTGACCGCTGAAAAGTTGAAATACATTCAAGTGAGTTGTCCGAACTTTTACTTTCCCTACAACTGA 3840 45.36 MSPTPEEPNNLQNGIETQPYISPESDQTSEPRSEPEPTADAIPSSELQQERESESVNNGVADSEPESLRKQLSESIHLQVVTDVTDPRFEERKETSIPSNGNTENSQPALRKDEGSRTFTMRELLNGLKGEDGNDILNESEGERPEGNSGYSLNQDSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATQNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGNVKDVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKVGYLTAPPLGRPLAPHSDWKRSQFFLNHDVLQKLNLGGEQIQTSPSILGRSGSTLNGDRTIKVEIPDIVSVSACADLTLPPGAGLCIDTIRGPVFLVADSWDALDGWLDAIRLVYTIYARGKNEVLAGIIAASGGVGDSRRQWRLQRRRLAESKATASRLPASSVVVGAVMGRMGGRQRTYTANSSDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPEVSLKKLFANLPPLSHRVKELQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNVNDDMAEMKEEEESINSCSVKDAFCPQASMKNFNSCNESYQDEHGVGASGQGLSQVECLSKKGNSMESDMLKAGLQEKTGWKRNGTSNEAEASTSGQDIVQGKTKTQLPKGRQTQSGPLLPGTVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQQPPKEACNVNVPTSILLPHLQNLFHQTSIQQDLIVNLLNSLQAADVVDASQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQVSCPNFYFPYN 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 867478 891804 + ClCG10G000820.2 Cla10g00086 281745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00086 1279 MobiDBLite consensus disorder prediction 98 113 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 1 165 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 1214 1233 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 1217 1231 - -
Cla10g00086 1279 ProSitePatterns Protein kinases ATP-binding region signature. 611 634 IPR017441 GO:0005524
Cla10g00086 1279 ProSiteProfiles Protein kinase domain profile. 605 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00086 1279 Pfam Protein kinase domain 670 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00086 1279 MobiDBLite consensus disorder prediction 991 1034 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 42 64 - -
Cla10g00086 1279 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 590 663 - -
Cla10g00086 1279 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 664 1269 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 986 1080 - -
Cla10g00086 1279 Gene3D Tetratricopeptide repeat domain 298 413 IPR011990 GO:0005515
Cla10g00086 1279 Gene3D Tetratricopeptide repeat domain 179 297 IPR011990 GO:0005515
Cla10g00086 1279 SMART serkin_6 605 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00086 1279 SUPERFAMILY Protein kinase-like (PK-like) 603 890 IPR011009 -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 145 165 - -
Cla10g00086 1279 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 590 663 - -
Cla10g00086 1279 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 664 1269 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 1042 1066 - -
Cla10g00086 1279 Gene3D Phosphorylase Kinase; domain 1 594 670 - -
Cla10g00086 1279 Gene3D Transferase(Phosphotransferase) domain 1 671 902 - -
Cla10g00086 1279 MobiDBLite consensus disorder prediction 1 34 - -
Cla10g00086 1279 SUPERFAMILY TPR-like 193 315 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00086 - - - csv:101213683 1243.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02238 Cla-Chr1:36347624 Cla10g00086 Cla-Chr10:867478 2.59E-06 dispersed
Cla10g00086 Cla-Chr10:867478 Cla10g01223 Cla-Chr10:26876990 1.71E-128 dispersed
Cla10g00086 Cla-Chr10:867478 Cla05g00470 Cla-Chr5:4284570 7.86E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80836 PF00069 Pkinase 4.90E-41 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00086 Cla_Chr10 FPKM 3.591661 4.828868 0.446374 0.936203 0.518392 0.535507 0.51994 0.271078 0.135644 0.302533