Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00088 ATGGCTATTCCCTCTTCTTTCACCATTACTGTTCCATTCCTTTCTTCTTCAAAGCTTCACCCCATTTCCAAATCCCTCTCCTTCTCTCCCTCCATTTCATTTCTATCTCCTCCATCCCCCAAATCTTCTTCTTTCACTACCCTATTCCGTATTTCCTCCTCTAACCCCTCAAATCCTTCTCCCATTGACTCCTCTGACTCCTTCGCTGCCCCTTTGCCCGCCGGAAATCGGACTTTAAAGTCCCGTCTCCGCAGTGGCGACACCCTCTACGGCCTCTTCCTCCTCTCCTTCTCCCCATCTCTCGCGGAGATCGCCGGCCTCTCCGGCTACGACTTCGTCGTCGTCGACATGGAGCATGGTTACGGCGGGATCTCCGACGCTCTCCCCTGTCTCCACGCCCTCGCCGCCGCACAAACTCCAGCCATTCTCCGGATCCCCGAAAGCTCCGCTGCCTGGGCCAAAAAAGCCCTAGATTTAGGCCCTCAAGGGATCATGTTTCCGTTGATTGATTCCTCCAAAGAGGCGAAAAAGGCTGTTTCATATTGCAGATTCCCACCCGCTGGAGTCCGAGGATCGGCCCATCCGGTGGTTAGGGCATCAAAATACGGCATTGACGAAGGCTATTTGACTAACTACGAGGACGAATTGCTGATTATGTGTCAGGTGGAATCGGAGCAAGCAGTGAAGAAGATAGATGAGATAATGGAAGTAGATGGGGTTGATTGTATTCAAATGGGGCCATTGGATATGAGTGGAAGTATGGGATATCTATGGGACCCTGGCCATAAGAAGGTGAAGGAGGTGATGAGAAAGGCAGAGAAGGCTGTTTTGGAGAGCAAAATTGAAAATGGCGGAAAGGGTGCGTTTCTGGCTGGTTTCTCAATGCCTCATGATGGGCCAATTGACATGAAAAGGCGTGGATATCAGATGATTTCTGGGACTGTTGATTTGGGTTTGTTTCGTAGTGCTGCTGTTGAGGATACATTTTCAGTTTTACTGTCTTTCTTCTGGTCTGCCGAAACTCTGCATCAGGGCCTAGCTTTTGACTTCTCTATGCATTTAGTTTTACATCTTCATCTTGGTATAGGATTGGATCACGTGCCATCATTGGTCAATGTTTGTCTCTTTTCCCCATCTTTGCCCTCTGAAATGTTGAGCAATCTAGGAAGTTTGAGAAGTTTTGGGGGGCATAGGAGTAAAATCCCCTTTCAGTTTGTGTCCTTTTTGCATCTCCTATGTCTGCTGCCATACTTTACAGCAGCAAGGTGTGATATCCATAGTGTAATCTGCTATCAGTACAAAGTTGGAGATTTGGATGCTTGGGGTCTTCCCGCTCCAGGAAACTCCCAGATCTACATGTATTGGTCTAAATATCACTCTCTCAAGATTGGTGATTCTCTCATGTTCTTGTACCCACCAAGCGAAGATTCAGTGATTCAAGTTACAAAAGAATCTTACAACAGCTGCAATCTCAAGGATCCAATCTTGTACATGAAAGATGGCAACTCTCTTTTTAACATTACTGATTATGGGGATTTGTTCTTCACAAGTGGAGTTGCAGGTCATTGTGAGAAGAATCAGAAGCTTCATATTTCTGTTCTTTCTGGAAATGGTTCTTCTGCTAGTGCTCCTTCTTCTGACGGTGCACTTCCTGAGATTTCTCCCTCTTACCCCACAGTTTTTGGTGGAATCCCAGCAGCTCCCAATGCCAATTCCAGTTCTTCCTCTTCCTCCTCCTTGCCTAAAAAAAGCCTTTTCTTCCTCCTGCTTTCATTGCTGCAGCTTTTGCTGGGCTAG 1797 47.02 MAIPSSFTITVPFLSSSKLHPISKSLSFSPSISFLSPPSPKSSSFTTLFRISSSNPSNPSPIDSSDSFAAPLPAGNRTLKSRLRSGDTLYGLFLLSFSPSLAEIAGLSGYDFVVVDMEHGYGGISDALPCLHALAAAQTPAILRIPESSAAWAKKALDLGPQGIMFPLIDSSKEAKKAVSYCRFPPAGVRGSAHPVVRASKYGIDEGYLTNYEDELLIMCQVESEQAVKKIDEIMEVDGVDCIQMGPLDMSGSMGYLWDPGHKKVKEVMRKAEKAVLESKIENGGKGAFLAGFSMPHDGPIDMKRRGYQMISGTVDLGLFRSAAVEDTFSVLLSFFWSAETLHQGLAFDFSMHLVLHLHLGIGLDHVPSLVNVCLFSPSLPSEMLSNLGSLRSFGGHRSKIPFQFVSFLHLLCLLPYFTAARCDIHSVICYQYKVGDLDAWGLPAPGNSQIYMYWSKYHSLKIGDSLMFLYPPSEDSVIQVTKESYNSCNLKDPILYMKDGNSLFNITDYGDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGALPEISPSYPTVFGGIPAAPNANSSSSSSSSLPKKSLFFLLLSLLQLLLG 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 899850 902400 + ClCG10G000850.2 Cla10g00088 281747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00088 598 Pfam HpcH/HpaI aldolase/citrate lyase family 90 322 IPR005000 GO:0003824
Cla10g00088 598 Gene3D - 431 545 IPR008972 -
Cla10g00088 598 Gene3D - 75 331 IPR040442 -
Cla10g00088 598 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 73 328 - -
Cla10g00088 598 ProSiteProfiles Phytocyanin domain profile. 431 535 IPR003245 GO:0009055
Cla10g00088 598 PANTHER 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE 73 328 - -
Cla10g00088 598 SUPERFAMILY Cupredoxins 430 534 IPR008972 -
Cla10g00088 598 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 72 324 IPR015813 GO:0003824
Cla10g00088 598 CDD OsENODL1_like 431 534 IPR041846 -
Cla10g00088 598 Pfam Plastocyanin-like domain 450 526 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00088 - - - csv:101213205 555.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00088 Cla-Chr10:899850 Cla11g01755 Cla-Chr11:31149410 4.07E-19 dispersed
Cla10g00088 Cla-Chr10:899850 Cla10g00524 Cla-Chr10:6934499 2.67E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013647 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00088 Cla_Chr10 FPKM 1.810304 1.834907 9.012375 8.408999 28.851263 32.133347 28.914408 7.010861 5.886968 6.250659