Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00097 ATGAACAATATTCTAACACTCTTCATCCTGGAACTAAGTTTCCTCAAACTGAAAAGATTTAGTACGATCACATTGGTGGAGTCTGCTAGGCTCAAGAAGAAAGTTTGTTTGGAGGAGTTTGAGGAGTATGCTGAGAAAGCAAAGACCTTGCCGGAGAACACAAGCAATGAAGACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTGAACACTAGCCGACCTGGAGTGTTCAACCAGAGGGACAGAGCCAAATGGGATGCCTGGAAGGCTGTTGAAGCTAAATCCAAGGACGATGCAATGAGCGACTACATCACCAAGGTGAAACAGTTGCAAGAGGCAGCTGCTGCTAGCTGA 369 46.07 MNNILTLFILELSFLKLKRFSTITLVESARLKKKVCLEEFEEYAEKAKTLPENTSNEDKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMSDYITKVKQLQEAAAAS 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 983209 986440 - ClCG10G000940.2 Cla10g00097 281756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00097 122 Pfam Acyl CoA binding protein 38 112 IPR000582 GO:0000062
Cla10g00097 122 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 36 121 IPR000582 GO:0000062
Cla10g00097 122 Gene3D - 24 122 IPR014352 -
Cla10g00097 122 PRINTS Acyl-coA-binding protein signature 37 52 IPR000582 GO:0000062
Cla10g00097 122 PRINTS Acyl-coA-binding protein signature 77 92 IPR000582 GO:0000062
Cla10g00097 122 PRINTS Acyl-coA-binding protein signature 98 115 IPR000582 GO:0000062
Cla10g00097 122 PRINTS Acyl-coA-binding protein signature 54 72 IPR000582 GO:0000062
Cla10g00097 122 ProSitePatterns Acyl-CoA-binding (ACB) domain signature. 54 72 IPR022408 -
Cla10g00097 122 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 38 122 - -
Cla10g00097 122 PANTHER BNAANNG25690D PROTEIN 38 122 - -
Cla10g00097 122 SUPERFAMILY Acyl-CoA binding protein 38 116 IPR035984 GO:0000062
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00097 K08762 DBI, ACBP; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) - qsu:112025219 160.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00097 Cla-Chr10:983209 Cla01g00034 Cla-Chr1:249131 7.04E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g898 . . . . . . . Bma14g00118 Cmo06g00604 Cmo16g01265 . . . . . Cpe14g01008 . . . . . . . . Cla10g00097 Cam10g0095 Cec10g0100 Cco10g0101 Clacu10g0096 Cmu10g0943 Cre10g0357 Cone8ag0533 Cone12ag0535 . . . . . Cme06g02406 . . Bda07g00131 . . . . . . . . Cma06g00598 Cma16g01222 Car06g00532 Car16g01149 . . . . . . . . . . . . . . . . . Csa03g00101 Chy06g02204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008957 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00097 Cla_Chr10 FPKM 1.777778 2.324258 12.094702 11.546765 14.049459 12.512166 14.283061 0.944976 1.234302 0.926815