Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00108 ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGTAAGAGGGAATCATCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACTTGAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTACCAGCAAGGAATGCTTGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTTATTGAATTGGATGTGATAGAGGAAATGTGTGAACGTATTGGTGACCCTGTATCAGCGACAAGATCGGTAACTGGTGCATTTAGTGGAAACCCCCTATCCACTGTGGGGGGCCTGGGGGCTTCACCTGGCAGTGGAATAATTGGTAAGGTGAATGTATCTAATGCGTCTTTTGAACAGCCTAAAGTGAACCAGTCACATGTACCGCCTATGGGATCTTATTCTAACCTTCCTGAGTCTGGAAGATACTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACCGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACTGGATCATATGGTGACCAGAAGATGGCATATCACAACAGTGGATCAGATATGCCCAGGCCACCTCTAAATGCTTATGCCCGTCCTCAGCCAATATATCAGCAGCCGCCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGTGACGGGAAAGTGTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATCAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGACGTAATTGGTATTGTTTCTTCCATTAATCCTGCAACTTCTTTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCCGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTAGCAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTAAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGATCGACAATGCAGCAAAAAGGTTACGAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTCCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAACAAGATGATGAGAAATTTGCTGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGATGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCGGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAAAACACCATACATAATCTCGGATTTCGTGACCGCTCTGGGAATATTGGTGGTGGACAGTTGGTATCACCCATTCGAAATAGCACCAATGTCAGCAGAGACTATGGCACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCATCCACACAGTTTAACTCGACCACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAACAAACTGCCCAAGTATTATGAGCGGTCCTGCGCTATCTGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGTCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGTCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCGGCTTCACGGCTAGGTGA 2577 44.39 MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSVTGAFSGNPLSTVGGLGASPGSGIIGKVNVSNASFEQPKVNQSHVPPMGSYSNLPESGRYSASIAPPPYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNAYARPQPIYQQPPPMYSNRGPVAKNEAAPRIMPIAALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGIVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLGAENTSSVTPKAENTIHNLGFRDRSGNIGGGQLVSPIRNSTNVSRDYGTPNQGVQYGNQYSSSRPSPSTQFNSTTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRASGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSGFTAR 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1056657 1060918 + ClCG10G001050.1 Cla10g00108 281767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00108 858 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cla10g00108 858 Gene3D - 376 514 IPR012340 -
Cla10g00108 858 Pfam Replication factor-A C terminal domain 548 699 IPR013955 -
Cla10g00108 858 ProSiteProfiles Zinc finger CCHC-type profile. 783 798 IPR001878 GO:0003676|GO:0008270
Cla10g00108 858 CDD RPA1N 13 109 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cla10g00108 858 CDD RPA1_DBD_C 532 705 IPR013955 -
Cla10g00108 858 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 243 705 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cla10g00108 858 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cla10g00108 858 PANTHER REPLICATION FACTOR A 1, RFA1 6 741 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cla10g00108 858 MobiDBLite consensus disorder prediction 199 219 - -
Cla10g00108 858 Pfam Replication protein A OB domain 387 490 IPR031657 -
Cla10g00108 858 SUPERFAMILY Nucleic acid-binding proteins 529 706 IPR012340 -
Cla10g00108 858 MobiDBLite consensus disorder prediction 162 184 - -
Cla10g00108 858 MobiDBLite consensus disorder prediction 162 253 - -
Cla10g00108 858 Pfam OB-fold nucleic acid binding domain 277 362 IPR004365 GO:0003676
Cla10g00108 858 SUPERFAMILY Retrovirus zinc finger-like domains 808 846 IPR036875 GO:0003676|GO:0008270
Cla10g00108 858 Gene3D - 8 123 IPR012340 -
Cla10g00108 858 CDD RPA1_DBD_B 398 505 - -
Cla10g00108 858 CDD RPA1_DBD_A 266 369 - -
Cla10g00108 858 PANTHER REPLICATION PROTEIN A SUBUNIT 6 741 - -
Cla10g00108 858 ProSiteProfiles Zinc finger CCHC-type profile. 827 841 IPR001878 GO:0003676|GO:0008270
Cla10g00108 858 SMART c2hcfinal6 782 798 IPR001878 GO:0003676|GO:0008270
Cla10g00108 858 SMART c2hcfinal6 826 842 IPR001878 GO:0003676|GO:0008270
Cla10g00108 858 Gene3D - 515 706 IPR012340 -
Cla10g00108 858 Pfam Zinc knuckle 826 841 IPR001878 GO:0003676|GO:0008270
Cla10g00108 858 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Cla10g00108 858 Gene3D - 778 845 - -
Cla10g00108 858 Gene3D - 263 372 IPR012340 -
Cla10g00108 858 SUPERFAMILY Nucleic acid-binding proteins 382 510 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00108 Cla-Chr10:1056657 Cla11g00142 Cla-Chr11:1729656 1.25E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00108 K07466 - csv:101211358 1592.4