Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00109 ATGAATGATGAGGCATCTGGGTGCTACTCTAATGATATGGACATCCAGAGATGCCCGTTCCTCAGGAATATCAATAAACCAACCTGCTTTTCCTTCTCCACCTTGAATATCACCTTCCCGGTTCGGGGAGCGAAAGGGCCAATTTTTGAGGAGGGTCCTAATTTTGACACAGCATTTAAGCTCTTTCATGGTAAAGATGGGGTTGTCCCACTATCTGAGAGATCCGGCTTTGAGAAAATATCGTTAGAAGCAGAGATGGCTCCTCATTTCAACCCCTTGGCTGCAAAAGCTGCAACCATCAGTCTGTCAGCTTTTGGACCAGGAGGGCCATTCAGCTTCGGTAACTTCTCTGAGAAATGGAAGAAACAAAAGTCTGAGGCATCCAACAAGAAAGATCATTTGTCACAGAAAAAAGGAAGTTCATCCAAGCACGAGGCTCTGGGAAGTGACTGGTTGGAAACAGGAAACTGCCCAATTGCGAAGTCTTTTAGAGCTGTTAGCGGAGTCCTCCCACTTGTTGCAACAGCTTTTCAGCTACCACCTGGCATGAAGCTTAAGTGCCCGCCCGCAATAGTTGCTGCCCGTGCTGCCCTAGCTCGTACAGCATTTGTAAAAAATCTGCGTCCTCAGCCACTTCCTTCAAAAATGCTTGTCATTGCGGCCTTAGGCATGGCGGCAAACGTTCCTCTTGGTATATGGAGGGAGCACACTAAGAAATTTTCGTTTTCATGGTTTGTAGCAATTCATGCAGCTGTACCCTTTATTGCCATGCTTCGGAAATCTGTCTTGATGCCAAAGACAGCCATGGCAATGACCATTGCTGCTTCTGTACTAGGGCAGGTTATCGGCTCAAGGGCTGAACGTATGCGACTGAAAGCTATTGCTGAAAAGGGAAAGGCAACAACAATTATGCCAACACTAGAGTCTACTCCAAGCTATGAGTTAACCCAGGTCGATGCCATAGTAGGTGGTCGTTGTGGTGTAGAAAGAATGGTGTTTGATCCTCTCCAGAAGAATGGCCCAAGTATTCTTGTTTACTTTGAGCTACGTTCGAGAGTGCTTTTCGTAATTTCAAAAGCATTTTTCATTCAAAGTCATCACGGAGAAGACAGGAACTCAGGCACCAAAATAGCTAGCAAAGTGCAAGCTTTCCACCTCGGTGGCGGCGCTACTACCGGAACATCTCTTCCAATGAAATAA 1200 46.25 MNDEASGCYSNDMDIQRCPFLRNINKPTCFSFSTLNITFPVRGAKGPIFEEGPNFDTAFKLFHGKDGVVPLSERSGFEKISLEAEMAPHFNPLAAKAATISLSAFGPGGPFSFGNFSEKWKKQKSEASNKKDHLSQKKGSSSKHEALGSDWLETGNCPIAKSFRAVSGVLPLVATAFQLPPGMKLKCPPAIVAARAALARTAFVKNLRPQPLPSKMLVIAALGMAANVPLGIWREHTKKFSFSWFVAIHAAVPFIAMLRKSVLMPKTAMAMTIAASVLGQVIGSRAERMRLKAIAEKGKATTIMPTLESTPSYELTQVDAIVGGRCGVERMVFDPLQKNGPSILVYFELRSRVLFVISKAFFIQSHHGEDRNSGTKIASKVQAFHLGGGATTGTSLPMK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1060513 1064167 - ClCG10G001060.2 Cla10g00109 281768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00109 399 MobiDBLite consensus disorder prediction 122 144 - -
Cla10g00109 399 PANTHER PROTEIN, PUTATIVE-RELATED 6 339 - -
Cla10g00109 399 PANTHER PROTEIN, PUTATIVE-RELATED 6 339 - -
Cla10g00109 399 Coils Coil 117 137 - -
Cla10g00109 399 MobiDBLite consensus disorder prediction 122 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00109 - - - csv:101211606 600.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02000 Cla-Chr9:37570486 Cla10g00109 Cla-Chr10:1060513 5.72E-141 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g885 . . . . . . . Bma14g00113 . Cmo16g01259 . . . . . Cpe14g01002 . . . . . . . . Cla10g00109 Cam10g0104 Cec10g0111 Cco10g0113 Clacu10g0108 Cmu10g0956 Cre10g0367 . . . . Lsi07g01138 . . Cme06g02414 Blo03g00842 . Bda07g00137 . . . . . . . . . Cma16g01214 . Car16g01141 . . . . . . . . . . . . . . . . . Csa03g00108 Chy06g02197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011057 1 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00109 Cla_Chr10 FPKM 3.269307 3.826369 8.90129 6.651658 5.906512 6.530256 6.218015 11.788467 10.498068 10.434908