Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00110 ATGGAAACCAGTATCTTTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTCTTTTGGGAATTCGTCTGGTTTCTTCGTGGCTTGGAGAAAATTTGAGGGAAGAAGAAGAGCGTCAAGGGAAACTCTGGATCCCAATTCTTCCCGTTCTTGGCGACGGAGGTTATGCTTTTTCATTTTTCGGTGTTGGATCGTTACTGCAACTGTTCAAAGCATTGTTGATGCAGCATCGGAACGATTTTCTAGGGGAAACTTCTTTAGGGTTATTCTCAAGGTTCAACATGTTCAGTGGTGTTTGTCATATATCATCGTATTGTTCCTCTCTTGAAGTTGAAGCTGTGGATTTTGTAATGAATAAAGCTGCACAGCCTGCTCATCAGAATTTTTCTGTTTCTCTACTTCTTTTGAATAAGGGAGGTTGTCTTTGTGCTTCTACGAGGAAAATGGAGAGGTACATGTTAATCAAGGAAGTTGGTGATGGTACTTTTGGAAGTGTCTGGCGAGCTATCAATAAGCAGACTGGGGAAGTTGTTGCAATCAAGAAAATGAAGAAAAAATATTACACATGGGAGGAGTGTGTCAATCTGAGAGAAGTGAAGTCATTGCGCAAGATGAATCATCCAAATATTGTGAAGCTCAAAGAAGTTATCAGGGAAAACAATATCTTGTACTTTGTATTCGAATACATGGAATGCAATCTTTACCAACTTATGAAGGATAAGGAAAAGCTCTTCTCAGAAGCTGAAGTGCGGAGTTGGTGCTTTCAAGTTTTTCAAGGTCTTGCCTACATGCATCAGCGGGGATATTTTCACCGTGACCTCAAACCAGAAAATTTATTAGTTGCTAAAGACTTGATAAAACTTGCTGATTTTGGGCTTGCTCGTGAAACTAGTGCTATACCACCCTATACTGAGTATGTTTCAACACGGTGGTACAGAGCTCCAGAGGTGCTGCTTCAGTCCTATCTCTATGGTCCTAAAGTTGATATGTGGGCAATGGGTGCTATAATGGCGGAGCTGTTTACTCTTCGTCCACTTTTTCCAGGAGCAAGTGAAACAGACCAAATCTACAAAATTTGCAATATACTCGGCACTCCAACTATGGATACATGGTCTGGTGGGCTTTGTCTTGCAAGGAACATCAATTATCAATTCCCGCAGTTTAAAGGTGTTCATCTCTCTGTTGTTATTCCCTCAGCCAGTGATGATGCAGTCAATCTTATTGCATCACTTTGTTCATGGGATCCGTCCAAGAGACCAACCGCTATGGAAGCCCTCCAACATCCCTTCTTCCAAAGTTGCTACTACGTTCCACCGTCTCTTCGTGCTAGAGCACCAATCGCTCGGACCCCTCCTTCTGTTGGAACAAAGGATTTGCTGGAGCAGCAGACTGCTAAAAGATATCCTGTGGCTTTATCTGATTCAAGAATTGCCGGTAATTTCTCCTCTCCGAAGTTGCCTGCGTTGTTGAGCACAGGTGTGCAGAGGAAGTTGGATTTGATGAACCAGGATGCAAATAAGAACGATAAAACTATGAAAAGCACAATTAGACAACAGAAATACCGACCGCCTGTGAGGAATAGCCCTACGAACTCCATCTACAAGGGAAATAATGTGCGTGGAGTTTCAGATACAGGTGAAAAGTTGGCAAACATGACAATCGCCCCTCGCAAGCCATCTATTGGGCAGCTTCCTCGTCCGATGAAAGCGGGTGTTCGTTGGAGCGGTTCCTCCAGTGATCTGTTAATAAGGCCCGCCCAAGAGTTTCAACCTGGCAGCAATTACCCGAGGAAGGTTGCTGGATGA 1803 43.59 METSIFTLVGTQQRSRVLLGIRLVSSWLGENLREEEERQGKLWIPILPVLGDGGYAFSFFGVGSLLQLFKALLMQHRNDFLGETSLGLFSRFNMFSGVCHISSYCSSLEVEAVDFVMNKAAQPAHQNFSVSLLLLNKGGCLCASTRKMERYMLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYTWEECVNLREVKSLRKMNHPNIVKLKEVIRENNILYFVFEYMECNLYQLMKDKEKLFSEAEVRSWCFQVFQGLAYMHQRGYFHRDLKPENLLVAKDLIKLADFGLARETSAIPPYTEYVSTRWYRAPEVLLQSYLYGPKVDMWAMGAIMAELFTLRPLFPGASETDQIYKICNILGTPTMDTWSGGLCLARNINYQFPQFKGVHLSVVIPSASDDAVNLIASLCSWDPSKRPTAMEALQHPFFQSCYYVPPSLRARAPIARTPPSVGTKDLLEQQTAKRYPVALSDSRIAGNFSSPKLPALLSTGVQRKLDLMNQDANKNDKTMKSTIRQQKYRPPVRNSPTNSIYKGNNVRGVSDTGEKLANMTIAPRKPSIGQLPRPMKAGVRWSGSSSDLLIRPAQEFQPGSNYPRKVAG 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1086073 1092038 + ClCG10G001070.1 Cla10g00110 281769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00110 600 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 148 541 - -
Cla10g00110 600 SUPERFAMILY Protein kinase-like (PK-like) 145 435 IPR011009 -
Cla10g00110 600 Gene3D Transferase(Phosphotransferase) domain 1 231 438 - -
Cla10g00110 600 MobiDBLite consensus disorder prediction 516 535 - -
Cla10g00110 600 ProSiteProfiles Protein kinase domain profile. 151 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00110 600 ProSitePatterns Protein kinases ATP-binding region signature. 157 181 IPR017441 GO:0005524
Cla10g00110 600 CDD STKc_MAK_like 151 430 - -
Cla10g00110 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Cla10g00110 600 MobiDBLite consensus disorder prediction 508 535 - -
Cla10g00110 600 Pfam Protein kinase domain 151 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00110 600 SMART serkin_6 151 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00110 600 Gene3D Phosphorylase Kinase; domain 1 141 230 - -
Cla10g00110 600 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 148 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00110 K08829 MAK; male germ cell-associated kinase [EC:2.7.11.22] - csv:101210621 900.968
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00110 Cla-Chr10:1086073 Cla08g01693 Cla-Chr8:29530279 1.61E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005380 1 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80837 PF00069 Pkinase 2.10E-74 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00110 Cla_Chr10 FPKM 8.108539 10.816713 7.662676 8.339982 13.678987 11.620888 13.524181 13.001364 14.662458 14.245072