Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00111 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATAAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACAGCTTCAGAAGGGGTACCATACCCTTACATAGGAGGGGCAAGTGCAAGTTCAACTCCTGCTTGGGACTTCCCTCCTGTTAATCGGCACCCACATGTCAGATCTGAGTCTAGATTTAAAGGGACTTTCAGAGGAGATCAGACCCCTGGAGGCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGAGAGAACTATGATAGAATAACGGAGCTCTATAATGTCCAGAGATTCAATCAACAAGCTCTTCATACGCCACCGAGAACTGAGGACGGGAGGGATTCTTCATACTCAAAGATGGGAAGGGACAGTCCGATGACTTCCGCAAACAAAGATTGGACGCCGAGAAACTATAAACCTTCTGGAAGTAAAGGATTTCCATCTGACCAGCATTTTGATCATGGAAGCAGCCACCCCTATGCAGGCTCAAGTGCCTACCCAGCAGGCAGCACCAAAGGTGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGACGAACCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCAGAATGGGTCGAGGAAGATGAGCCGGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTTAGATTCAGCCGTGAAAGGTTCGGGGAAATGAACGCAAAGCAATGGTGGGAACACAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1086 48.53 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHVRSESRFKGTFRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHFDHGSSHPYAGSSAYPAGSTKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1093492 1099900 - ClCG10G001080.1 Cla10g00111 281770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00111 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
Cla10g00111 361 MobiDBLite consensus disorder prediction 203 299 - -
Cla10g00111 361 MobiDBLite consensus disorder prediction 11 30 - -
Cla10g00111 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Cla10g00111 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Cla10g00111 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Cla10g00111 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Cla10g00111 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Cla10g00111 361 MobiDBLite consensus disorder prediction 223 247 - -
Cla10g00111 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Cla10g00111 361 MobiDBLite consensus disorder prediction 272 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00111 Cla-Chr10:1093492 Cla11g00145 Cla-Chr11:1740167 4.91E-09 dispersed
Cla10g00111 Cla-Chr10:1093492 Cla09g00081 Cla-Chr9:798235 4.48E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00111 - - csv:101210860 736.487