Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00118 ATGGCGACTCTTGGGGATATAGGGGTTTCAGCATTAATCAATATCCTCACTGCCTTTGTTTTTCTTCTTGCTTTTGCTCTCTTGAGAATTCAACCCATCAACGATAGAGTTTATTTTCCTAAATGGTATATCAATGGCGGACGAAATAGTCCCCGTAGTTCCAGAAATTTTGTTGGGAAATATGTTAATCTCAACATTTGCACTTATCTCACTTTCTTGAACTGGATGCCTGCGGCTTTGAAGATGAGTGAAACTGAAATTATTACTCATGCTGGGTTTGATTCTGCTGTTTTTCTCCGAATTTATACTCTCGGGTTGAAGATATTCTTTCCAATAACCATTGTTGCACTACTTGTTCTCATACCAGTCAATGTGTCTAGTGGGACACTGTTCTTCTTAAGGAAAGAATTGGTTGTAAGCGACATCGATAAGCTTTCAATATCCAATGTTCGTCCTCAATCTATAAGGTTTTTTGCTCATATAGGATTGGAGTACTTGTTCACCCTATGGATTTGTTACATGCTTTACAAAGAATATGACAATGTAGCACAAATGAGATTGAATTTCTTGGCATCGCAACGCAGACGTGCCGAGCAGTTTACCGTGTTGGTTAGCAATGTACCACATTCATCTGGTCGCTCAACCTCGGATACGGTTGATCAGTTCTTTCATAAAAATCATCCCGAACATTATCTTTCTCATCAGGCTGTATATAATGCCAACAAGTTCGCTAAACTAGCAAAAAAGAGAGCGAGGCTCCAGAATTGGTTGGATTATTATCTACTTAAGTTTGAAAGGCATCCGGATAAGAGACCGACTACAAAGAGATTGGACCAATTGAACTCTTTCTTTCAGACAGGATGGTTTGGACTTTGTGGTAGAAGAGTCGACTCTATTGAATACTACAAACAACAAATGAAGGATCTTGATGCCAGAATGGCATTGGAGAGACAGAAAATTATCAAAGATCCAAAATCAATATTACCAGTTGCTTTTGTTTCGTTCGATTCTCGATGGGGTGCTGCAGTTTGTGCACAGACGCAGCAGAGTAAGAATCCCACATTGTGGCTGACAAATTGGGCTCCAGAACCTCATGATGTTTATTGGCAGAACCTTGCTATACCATTTGTTTCCCTAAGCATCAGAAAACTAGTTATATCATTATTGGTTTTCGCTCTAGTGTTCTTCTACATGATACCAATTGCTTTTGTTCAATCACTTGCCAATCTGGAAGGTCTTGAACGAGTTGCTCCTTTCCTAAGGCCCGTGATAGAATTGGAGTTCGTCAAGTCGTTTTTACAGGGTTTCCTTCCTGGTTTGGCTCTCAAAATCTTTCTATATATACTTCCATCAGTTCTAATGGTCATGTCAAAAATTGAGGGGCATGTAGCAGTTTCTACGCTTGAAAGAAGGGCTGCAGCAAAGTACTATTATTTTATGCTGGTAAACGTGTTCTTGGGAAGTATTGTGACTGGTACAGCTTTTGAGCAACTGGATTCCTTCATTCACCAATCTCCTACCCAAATTCCTCGGACGATTGGAGTTTCCATACCGATGAAGGCTACTTTCTTCATTACATACATAATGGTTGATGGATGGGCCGGAATAGCAAGCGAGATTCTTCGATTAAAACCGCTGGTCATCTTTCATCTCAAGAATCTTTTTTTGGTGAAAACTGATAGAGATAGAGCAAAGGCAATGGATCCAGGAAGTGTGGAATTTCCCGAAACTTTACCGAGCTTACAATTGTACTTTCTACTGGGAATTGTCTACGCCGTGGTCACCCCAATTCTTCTCCCATTTATACTAGTCTTCTTCGCATTTGCATACTTGGTATACCGACATCAGATCATCAATGTTTATAATCAGCAATATGAGAGTGTTGGTGCCTTTTGGCCTCATGTTCATAGCCGCATCATAGCAAGCTTGTTGATATCTCAACTACTTTTATTGGGTTTGCTCAGTACAAAAAAAGCTGCCAATTCTACTCCATTGCTCGTTGCCTTACCGATATTGACATTATTCTTCCACAAGTACTGCAAGAACCGGTTCGAACCTGCATTTCGTAAATACCCTCTCGAGGAAGCGATGGCCAAAGATACGTTGGAGCGGAGCACGGAACCTGACCTCAATGTAAAAGCCTTCTTAGCAGATGCTTACTTGCATCCGATTTTCAGGTCCTTTGAGGAAGAGGAATTATCAGAGATTAAAGTTGAGAAACAAAAGTCTCCAGTACATGATGACAGCTCTGTGAGTGAACTCAGTTCTCCTTCCCCACCACACATTGTTAATGATGATCATCATCATCCTCAGTCGCCTCCCCATTATATGTATCATCCTCAATCCCCTCCTCATTTTGTATATCCTTCACATCCTTCACACCATTATGCCTATAGTTATGATCCTGAGCATTAG 2415 40.62 MATLGDIGVSALINILTAFVFLLAFALLRIQPINDRVYFPKWYINGGRNSPRSSRNFVGKYVNLNICTYLTFLNWMPAALKMSETEIITHAGFDSAVFLRIYTLGLKIFFPITIVALLVLIPVNVSSGTLFFLRKELVVSDIDKLSISNVRPQSIRFFAHIGLEYLFTLWICYMLYKEYDNVAQMRLNFLASQRRRAEQFTVLVSNVPHSSGRSTSDTVDQFFHKNHPEHYLSHQAVYNANKFAKLAKKRARLQNWLDYYLLKFERHPDKRPTTKRLDQLNSFFQTGWFGLCGRRVDSIEYYKQQMKDLDARMALERQKIIKDPKSILPVAFVSFDSRWGAAVCAQTQQSKNPTLWLTNWAPEPHDVYWQNLAIPFVSLSIRKLVISLLVFALVFFYMIPIAFVQSLANLEGLERVAPFLRPVIELEFVKSFLQGFLPGLALKIFLYILPSVLMVMSKIEGHVAVSTLERRAAAKYYYFMLVNVFLGSIVTGTAFEQLDSFIHQSPTQIPRTIGVSIPMKATFFITYIMVDGWAGIASEILRLKPLVIFHLKNLFLVKTDRDRAKAMDPGSVEFPETLPSLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNQQYESVGAFWPHVHSRIIASLLISQLLLLGLLSTKKAANSTPLLVALPILTLFFHKYCKNRFEPAFRKYPLEEAMAKDTLERSTEPDLNVKAFLADAYLHPIFRSFEEEELSEIKVEKQKSPVHDDSSVSELSSPSPPHIVNDDHHHPQSPPHYMYHPQSPPHFVYPSHPSHHYAYSYDPEH 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1199621 1205778 + ClCG10G001170.1 Cla10g00118 281777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00118 804 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 762 - -
Cla10g00118 804 Pfam Late exocytosis, associated with Golgi transport 7 178 IPR032880 -
Cla10g00118 804 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 762 IPR045122 GO:0005227
Cla10g00118 804 Pfam Calcium-dependent channel, 7TM region, putative phosphate 382 654 IPR003864 GO:0016020
Cla10g00118 804 Coils Coil 299 319 - -
Cla10g00118 804 MobiDBLite consensus disorder prediction 738 793 - -
Cla10g00118 804 Pfam Cytosolic domain of 10TM putative phosphate transporter 199 371 IPR027815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00118 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - csv:101207845 1474.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02006 Cla-Chr1:34693560 Cla10g00118 Cla-Chr10:1199621 3.42E-16 dispersed
Cla05g02418 Cla-Chr5:35686484 Cla10g00118 Cla-Chr10:1199621 1.57E-133 dispersed
Cla09g00631 Cla-Chr9:5930006 Cla10g00118 Cla-Chr10:1199621 0 dispersed
Cla10g00118 Cla-Chr10:1199621 Cla05g02118 Cla-Chr5:32775012 6.86E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g784 . . Bda06g01235 . . Bpe07g00244 Bma07g01005 . Cmo06g00621 Cmo16g01249 . . . . . Cpe14g00994 . . . . . . . . Cla10g00118 Cam10g0115 Cec10g0124 Cco10g0124 Clacu10g0121 Cmu10g0968 Cre10g0378 . . . . Lsi07g01149 . . Cme06g02425 . . . . . . . Bma12g00247 . . . Cma06g00614 Cma16g01202 Car06g00547 Car16g01132 . . . . . . . . . . . . . . . . . Csa03g00119 Chy06g02185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008449 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00118 Cla_Chr10 FPKM 6.188119 8.131902 9.344267 9.752505 7.709597 5.28342 7.62811 8.876016 6.50033 6.435108