Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00121 ATGGCCGCTTTACAGTACCTCGATTCCCTTCGTAACTCGCATCCTGAGCTCGCTGAATGGTACAATACGCTCGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTCAAGCTTGAGCAATTCGTCGCTCTGACGGTCTTCCAGGGTTTTGGGTCTGGGAATGTTAAGATTGAATTTTTTATAGCGAAATGGATTGCGAAGTTAGGGTTTTTAGTTGGAGAGGATTGTGAGTTGAAATGTAAAATTAAGATTTTGTTACACTGTAGTAGAGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACTAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTCGAAGGGATAATTGAGAAACTAAGGAGTACTAAAGAGCAGCGCATAGAGGAGCCTATCCTCTATATTAAGATGCAAATAGCCATTTTTAAGCTTGAGCAAGGTGACCGGAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACACTTGACAGCATGACTGACATTGATCCATCTGTATATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTTTATCTGGCCTACACTTCAGTGGAATCACTGTCAGACTCATTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCGCTTCTGGGAGATAATATCTACAACTTTGGGGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTACAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCATAATGCAGCTTTAAGGGCTCAACCAGCTTTAGTAGAGAATGAGAAGAAACTATTAGAGAAAATCAACATTCTCTGCCTCATGGAAATTATCTTCAGGCATGCAGGCTTTGCTCCTTTCCGGCCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCAGAACGGACAAAACTTTCTATAGAAGATGTGGAGCATCTACTAATGAAGAGCCTCTCTGTCCACCTTATAGAGGGTATAATCGATCAAGTTGAGGGAACGGTACATGTTTCCTGGGTGCAACCTAGGGTTCTGGGCATTCAACAGATCAAATCCCTGCGAGACCGGCTGGACAATTGGGTGGATAAAGTGCATTCTACTTTGCTTTCGGTCGAGGCCGAGACCCCTGATCTCGTTGCATCATGA 1308 42.28 MAALQYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQGFGSGNVKIEFFIAKWIAKLGFLVGEDCELKCKIKILLHCSRAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEQRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFRHAGFAPFRPSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDNWVDKVHSTLLSVEAETPDLVAS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1229450 1233786 + ClCG10G001210.2 Cla10g00121 281780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00121 435 SUPERFAMILY Winged helix DNA-binding domain 347 397 IPR036390 -
Cla10g00121 435 SMART PINT_4 314 414 IPR000717 -
Cla10g00121 435 Pfam PCI domain 280 392 IPR000717 -
Cla10g00121 435 ProSiteProfiles PCI domain profile. 216 396 IPR000717 -
Cla10g00121 435 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 67 IPR035298 -
Cla10g00121 435 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 80 434 IPR035298 -
Cla10g00121 435 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 67 - -
Cla10g00121 435 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 80 434 - -
Cla10g00121 435 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 314 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00121 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 682.559
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g756 Blo02g00972 . Bda06g01241 Bda08g00645 Bpe05g00514 . . . Cmo06g00624 . . . . . . . . . . . . . . . Cla10g00121 Cam10g0119 Cec10g0128 Cco10g0128 Clacu10g0125 Cmu10g0972 Cre10g0382 . . . . Lsi07g01154 . . Cme06g02433 . . . . . . Bma05g00700 . . . . Cma06g00617 . Car06g00550 . . . . . . . . . . . . . . . . . . Csa03g00125 Chy06g02180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00121 Cla_Chr10 FPKM 6.883814 7.470159 8.370538 8.964989 9.725715 10.25307 11.365759 12.941609 11.734483 12.798515