Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00123 ATGATCGATCTGTTTCTAGTAGAGCCCACCTTCAATGACGAACAGGATGTTGGCTCTGCGAAGTTGAGAATTTCTCTGTTAAGTAAATTAGAATCTGTTTTATGGAAGTTGCTGACTTCTGGAGGACGTTCTGAGGTTCGATTATGGCTTTCTAATACCATAGCTAGTGTGACATCTATCAGTCCCCAGCATCAGCGGGACCTGTTTATGGCATTACTGAGACGGAAGCCATTGAAGAGGGCCTTCGCATCTCAATTACTGCAAATGTTGTTTGAAAAGAGATCACGAGAGGCAGGGATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGAAACCCACGACGAATATCTCAGTGGTTTTCCAATTTTGCCACGAATGGTGCATCAGATCATGGGAAAGGTGCCAAGGCCTTAGCACAGTTTGCTTTTGTAAATCGAGACATTTGCTGGGAGGAGCTTGAGTGGAAGGGGAAACATGGGCAGTCACCTGCAGTTGTTGCAACAAAGCCCCATTATTTTCTTGATCTGGATGTGCATCAAACTGTGAAGAATTTCATTGAGAACGTACCAGAGTTTTGGTCTTCCATTGAGTTTGCCGAGTCACTTAAAGATGGTGAAATTTTGTTTCTCGACACGAAATTCTTTGCGAAATATTTTGTCGATCTGATGCTTAAAGATGATCCAAAAGATGTTTGGGAAGTCATTGATGAGTTCCTAATGCATGAATCATTTTCTTCACTGTGTCAACGTCTCCTCGTTACTCTCGAAGAGGCTGATTTCTGCAACTTTCTAAAAATGCTATGTAAACTTCTTAGGCCTAGAATAGAAACCAAGGATTTTGGTAATTCGTCTTTTATGTTTGAAGTCATACTTTCCAAGTATGGCGACTCTGAATCTATTGATCAGATCTTACTATTAAATGCTGTCATTAATCAAGGACGCCAACTTCTACGCCTTTTACGTGATGAAGATGGGGAGGAACAATTGGATGAAATCAAGGCTATTGTCCACAAGATTTCAGTGATCTCAAGCAACACTCATAGTTTATTCCCACTATTGAAGGAGTGTGACGAGAGAAAAAAGACAATAGAGATGATAAAATGGCTAGGGCTTCAGTCTTGGGTTCTTCATTATAGAATGTCAGAGGAATGTCAGACTCCTGAGTTATGGGAATCCTTGTTTGTTGATAACGGCATAGGATTCCAAAAATCTAATGAATATTCGTTGTTGGATCACAGTTGCCTATCAGAAGATGATGGTTTGGAACCATGTAATAGAGCACAAGCTAAATCTAAGAAGCAAAAAAAGGGGAGAAAAGGTAGAAAAAGAAGAAAAAGGAACTTTGACAACGAGGATAGCTGTGATGATGAGCTGCTGGACTTTGATATTAAGAATGATAGGATGGACTTGAAGTTAAACACTGGAAGTTGGTTGCTTTCCACTGATGAATATGCTGTAACATGGAATGCTAAGGATCTACCAGAACACCTATCAAAGCACTCAATGGAAGGAGACCGGATTCTACCTTCTGAAACCGTGATGGCTACCAACAAGATTACTGTTACCAACACATACAAGCTCGATCAGATGTATTGGCGGCAAAAGTTGATCAGGTACTCCCTCCGCCGCCGTTGCCGCTCTGTGGATATGAGCGGAGAAGCTGAGCAGAAACTGGAGGCTCGGCGTCTCAGAGAATTGGCAGAGAAGAAGTTCAGAGATTCCAATCTCAAGTCTGCTCTCAAGTACGCCAAGCGAGCCCACCGCCGCGATCCAAACCTTGACGGCGCCGCCGAAATCCTCACTTCCTTACAGATTCTCCGAGTCGCCGCCGACTCTCCGGATGACTGGTACCGGATTCTTCAGGTGGAGCCTTTCGCTCACATTAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTGCTTCTGCATCCGGATAAGAATCCCTATTTCGGCTCCGAGGAGGCGTTCAAGCTCGTCGGGGAGGCGTTTCACTTTTTTTCCGATAAGGTCAGGAGGAAGGAGTACGATTTGAAGCTCCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGATGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCGACGTGCCGGCTTTTGCACCAGTTCGAAAAGAGGTACGTAGGGCATAATTTAGTCTGCCCTAATTGTAGGAAAAGTTTTAAGGCCGTTGAAGTTGTGTATGATGAACCTGAGATTAGGGAAATTGGGGTCATGGTTAGGGGTCGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTCAAGGGATTAAAAGAATCTGTGAATACTAATCAATTGAAGAGAAATACTACAGTGAGTAAGACGAATGGTGAGAAGAAGAAAGGTCTGGAGTTAAATGGAAAAGCTGGTTCTATAGAAGGTGAAGTTAGAAATGGCAATTTAGAGGGAGTTGATAATGATGATGAGATATGTATAAGAAGATTAAGAAGTGGGAGTTTGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTAGAGAGGTCTAAGCTGAAGCCTGTTAAAATGGAAGAGGAAATGATGACTTTGGCTGAATTACAGTCTCAAGTGATTCAGAAAGCACGAAAAGAGAAGATGAAGCTGAAGTTAAAGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGAAAGAAAGGGGTTGAGGAGAATGACGATGACGACGAGAGACTAACTTTGAAAGAGATGGAAGGTCTACTACGGATTCGTAGGCAAGGAGCATCAAAGCGTCCCGGGTTTTTGGAGAATGCACAGCAAAAGAATTCCAAGAAGAATGTGAATCTGGAAACTCAGAAGCAAGAAGCTTCATGTAATGGTGTTGATTTGGATATGATGGTGGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAGGGGCAAGTGTGGGCTATATATGATGATGATGATGGAATGCCTAGGCATTATGGTTTGATTGAAGAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTCACTAAAAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCTATAGGATTTATCCCAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGGAGAAGGTTTGGATGCTGAGAAGAGAAGAAACCTTTTGAGCAAAGGGAAACGAACTTACGATATCGCAGTGTTTTTAACAACGTACAGTGAGATGCATGGTTTAAGCATGGCTTATCTTGAGAAGGTTGATGGTTACAAGACCATATTCAAGAGAAAAGAGATCGGTTATCATGCTATTAGATGCTTCTCTTCCTTCGGATTTGCTAACCACCTATTGGAACAAATAGAATCTGAGTGCAAAACTCCCATGCTGCTCGTGTTTGACGATATCTTATTCTTTACATTGACGGTTTTCTGGCGAACTGGTTATCGGGAATGTACTCACTACCCATATATCGCATCGGCTGATCACACATTGACTCTCAGAGTTGCCTCAGCTCCTGGGAAAGTATTATTGACAGGAGGATACCTAATTTTGGAGAGGCCAAATGCTGGTTTGGTACTCAGTACAAATGCTCGGTTTTATGCAATTGTGAAACCACTTCACGAGCAAACTGAGCCAGAAAGTGGGGATGGGGAATGGGTAGATGTGAAGTTGACCTCACCACAACTTTCTCGAGAAAGTCTGTATAAATTATCGCCCGAGAACCTCATGATTCAGTGCATCTCCTTGAGTGAGTCAAGGAACCCTTTCATAGAACATGCTGTGCAGTATTCCCTAGCTGCTGCACATGGAATATTTGTCAAGAACAAGAAAGATTCACTGCACAGCTTTTCAGGTCTTGATATCACAATCTTAGGATGCAATGATTTCTACTCTTATCGGAATCAGATTGAAGCACATGGACTTCCTTTGACACCAGAATCACTGGTTTCTTTTCCACCATTTGCATCAATTACCTTCAATGCTGAGCCATCAAATAGTGAAAATTGCAAGCCTGAAGTTGCAAAGACAGGATTGGGATCATCTGCTGCAATGACAACTGCTGTTGTTGCTGCCCTACTTAATTATCTTGGAGTTGTAAATCTTTCCTCATCAAGAGGTCAAGAGAAAGAAAATGATATGAAGGATCTTGATATGGTGCATGCAATAGCCCAAACTGCTCATTGCATTGCACAGGGAAAAGTTGGAAGTGGATTTGATGTCAGCTCTGCCGTCTATGGCAGCCAACGGTATGTTCGTTTCTCACCTCACGTGCTGGCCACTGCTCAGGCAGCTGTTAAAGGACCGCTAGAAGAGGTCATTGTCGATATCTTAAAAGGAAAGTGGGACCATGAGAGGACTGAGTTTTCCTTGCCTCCATTAATGAATCTTTTATTAGGGGAACCAGGAGCTGGAGGATCATCCACACCATCTATGGTAGGTGCTGTTAAAAAGTGGCAAAAGTCTGACCCTCAGAAATCTCAAGAAACATGGAATAAGTTGTCGAAAGCAAATATTGATTTCGAGAAGCAATTAAATTTACTGAGAAAACTTGCAGCAGAACAATGGGATGTGTATAAATGCATCATAAGTAAATGCAGCACACTTGGATCAAAGAAGGGCAAGGAGTGGAATCATAGAGTCTGGGCAGTTGTGAACTCCTGGGCCAATAGTTGGATAGAACAAGCCACTGAACCAAGCCAACAAGCAATTGTTAAAGCATTGTTAGGAGCAAGAGATGCCATGCTCGAAATACGAAATTGTATGAAGCAAATGGGCGAAGCTGCAGGTGTTCCAATTGAACCAAAGCCACAAACTGAACTTTTAGATGCAACCATGGAATTGGAAGGAGTTTTGTTGGCTGGAGTTCCAGGGGCAGGTGGGTTTGATGCTGTATTTGCTATTACATTGGGTGATTCTAGCAGCCATGTGATTAAGTCATGGACTTCACTCAATGTTCTTGCCCTCTTAGTTAGAGAAGATCCCGATGGAGTTGCTCTTGAAAGTGATGATCCTAGAGGTAAGAGCTGTACTGTTTAA 5172 42.17 MIDLFLVEPTFNDEQDVGSAKLRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSISPQHQRDLFMALLRRKPLKRAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGNPRRISQWFSNFATNGASDHGKGAKALAQFAFVNRDICWEELEWKGKHGQSPAVVATKPHYFLDLDVHQTVKNFIENVPEFWSSIEFAESLKDGEILFLDTKFFAKYFVDLMLKDDPKDVWEVIDEFLMHESFSSLCQRLLVTLEEADFCNFLKMLCKLLRPRIETKDFGNSSFMFEVILSKYGDSESIDQILLLNAVINQGRQLLRLLRDEDGEEQLDEIKAIVHKISVISSNTHSLFPLLKECDERKKTIEMIKWLGLQSWVLHYRMSEECQTPELWESLFVDNGIGFQKSNEYSLLDHSCLSEDDGLEPCNRAQAKSKKQKKGRKGRKRRKRNFDNEDSCDDELLDFDIKNDRMDLKLNTGSWLLSTDEYAVTWNAKDLPEHLSKHSMEGDRILPSETVMATNKITVTNTYKLDQMYWRQKLIRYSLRRRCRSVDMSGEAEQKLEARRLRELAEKKFRDSNLKSALKYAKRAHRRDPNLDGAAEILTSLQILRVAADSPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYFGSEEAFKLVGEAFHFFSDKVRRKEYDLKLRIRIQDEKIGDADVESETFWTACSTCRLLHQFEKRYVGHNLVCPNCRKSFKAVEVVYDEPEIREIGVMVRGRRLRNLSSRQNSGSFKGLKESVNTNQLKRNTTVSKTNGEKKKGLELNGKAGSIEGEVRNGNLEGVDNDDEICIRRLRSGSLRKKMSSVGEVLERSKLKPVKMEEEMMTLAELQSQVIQKARKEKMKLKLKEEEEAEERENKRKKGVEENDDDDERLTLKEMEGLLRIRRQGASKRPGFLENAQQKNSKKNVNLETQKQEASCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVYRIYPKKGSVWALYKEEGEGLDAEKRRNLLSKGKRTYDIAVFLTTYSEMHGLSMAYLEKVDGYKTIFKRKEIGYHAIRCFSSFGFANHLLEQIESECKTPMLLVFDDILFFTLTVFWRTGYRECTHYPYIASADHTLTLRVASAPGKVLLTGGYLILERPNAGLVLSTNARFYAIVKPLHEQTEPESGDGEWVDVKLTSPQLSRESLYKLSPENLMIQCISLSESRNPFIEHAVQYSLAAAHGIFVKNKKDSLHSFSGLDITILGCNDFYSYRNQIEAHGLPLTPESLVSFPPFASITFNAEPSNSENCKPEVAKTGLGSSAAMTTAVVAALLNYLGVVNLSSSRGQEKENDMKDLDMVHAIAQTAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPHVLATAQAAVKGPLEEVIVDILKGKWDHERTEFSLPPLMNLLLGEPGAGGSSTPSMVGAVKKWQKSDPQKSQETWNKLSKANIDFEKQLNLLRKLAAEQWDVYKCIISKCSTLGSKKGKEWNHRVWAVVNSWANSWIEQATEPSQQAIVKALLGARDAMLEIRNCMKQMGEAAGVPIEPKPQTELLDATMELEGVLLAGVPGAGGFDAVFAITLGDSSSHVIKSWTSLNVLALLVREDPDGVALESDDPRGKSCTV 1723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1248242 1266221 - ClCG10G001230.2 Cla10g00123 281782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00123 1723 MobiDBLite consensus disorder prediction 430 451 - -
Cla10g00123 1723 SMART dnaj_3 618 675 IPR001623 -
Cla10g00123 1723 CDD DnaJ 619 672 IPR001623 -
Cla10g00123 1723 Gene3D DnaJ domain 608 705 IPR036869 -
Cla10g00123 1723 SUPERFAMILY Chaperone J-domain 608 684 IPR036869 -
Cla10g00123 1723 Pfam Domain of unknown function (DUF3444) 963 1147 IPR024593 -
Cla10g00123 1723 Pfam GHMP kinases C terminal 1626 1692 IPR013750 -
Cla10g00123 1723 PANTHER - 1213 1722 - -
Cla10g00123 1723 MobiDBLite consensus disorder prediction 434 448 - -
Cla10g00123 1723 Gene3D - 1212 1512 IPR014721 -
Cla10g00123 1723 TIGRFAM Pmev_kin_ERG8: phosphomevalonate kinase 1213 1717 IPR016005 GO:0004631
Cla10g00123 1723 Pfam GHMP kinases N terminal domain 1381 1459 IPR006204 GO:0005524
Cla10g00123 1723 Coils Coil 871 903 - -
Cla10g00123 1723 ProSiteProfiles dnaJ domain profile. 619 683 IPR001623 -
Cla10g00123 1723 MobiDBLite consensus disorder prediction 929 951 - -
Cla10g00123 1723 PRINTS DnaJ domain signature 639 654 IPR001623 -
Cla10g00123 1723 PRINTS DnaJ domain signature 621 639 IPR001623 -
Cla10g00123 1723 PRINTS DnaJ domain signature 655 675 IPR001623 -
Cla10g00123 1723 PANTHER - 1213 1722 IPR035102 -
Cla10g00123 1723 Coils Coil 933 953 - -
Cla10g00123 1723 MobiDBLite consensus disorder prediction 882 911 - -
Cla10g00123 1723 SUPERFAMILY Ribosomal protein S5 domain 2-like 1213 1518 IPR020568 -
Cla10g00123 1723 MobiDBLite consensus disorder prediction 931 951 - -
Cla10g00123 1723 Pfam DnaJ domain 619 680 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00123 K00938 E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2] - cmax:111498825 1768.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g01084 Cla10g00123 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01439 Cla-Chr7:31626438 Cla10g00123 Cla-Chr10:1248242 6.01E-30 dispersed
Cla09g01575 Cla-Chr9:31401189 Cla10g00123 Cla-Chr10:1248242 3.47E-12 dispersed
Cla10g00123 Cla-Chr10:1248242 Cla11g01422 Cla-Chr11:27775757 4.41E-23 dispersed
Cla01g00053 Cla-Chr1:434329 Cla10g00123 Cla-Chr10:1248242 1.13E-31 transposed
Cla06g00511 Cla-Chr6:6184624 Cla10g00123 Cla-Chr10:1248242 5.51E-25 transposed
Cla06g01746 Cla-Chr6:31019489 Cla10g00123 Cla-Chr10:1248242 1.58E-33 transposed
Cla10g00123 Cla-Chr10:1248242 Cla09g01084 Cla-Chr9:11506107 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004105 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 1 5 6 0 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00123 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0