Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00124 | ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACCACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCACCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTACAATGCCTTCTCCGAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAACCACCCGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACCGGGAAGAACAATGAGCTGGGTAAAGCATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCTCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATCCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGACTATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCGGCAGGAAAGGCCAGCGTATAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTAACAAGAATTGA | 1218 | 47.7 | MSGSEMEKPPKDKETKTPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFTMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKASGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGASGVVPGPTTNLNIGMDYWGASSTIPAIRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSENASLKERLGEVPGNEEVRAGRKGQRISNETTQPTESEVVQVGNKN | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1268952 | 1275174 | + | ClCG10G001250.1 | Cla10g00124 | 281783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00124 | 405 | PANTHER | BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 400 | - | - | |
| Cla10g00124 | 405 | SMART | brlzneu | 299 | 363 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | Gene3D | - | 302 | 356 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 365 | 405 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 120 | 205 | - | - | |
| Cla10g00124 | 405 | CDD | bZIP_plant_GBF1 | 304 | 354 | IPR045314 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | Pfam | bZIP transcription factor | 299 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | Pfam | Disordered region downstream of MFMR | 137 | 264 | - | - | |
| Cla10g00124 | 405 | Coils | Coil | 319 | 367 | - | - | |
| Cla10g00124 | 405 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 301 | 364 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | Pfam | G-box binding protein MFMR | 3 | 98 | IPR012900 | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 369 | 383 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 17 | 42 | - | - | |
| Cla10g00124 | 405 | SUPERFAMILY | Leucine zipper domain | 302 | 358 | IPR046347 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 302 | 324 | - | - | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 148 | 205 | - | - | |
| Cla10g00124 | 405 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 306 | 321 | IPR004827 | GO:0003700|GO:0006355 | |
| Cla10g00124 | 405 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 400 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
| Cla10g00124 | 405 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla09g01088 | Cla10g00124 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00118 | Cla-Chr5:1148327 | Cla10g00124 | Cla-Chr10:1268952 | 5.23E-44 | dispersed | |
| Cla10g00124 | Cla-Chr10:1268952 | Cla05g02362 | Cla-Chr5:35204935 | 2.88E-11 | dispersed | |
| Cla10g01820 | Cla-Chr10:34088031 | Cla10g00124 | Cla-Chr10:1268952 | 8.58E-09 | dispersed | |
| Cla01g01889 | Cla-Chr1:33695246 | Cla10g00124 | Cla-Chr10:1268952 | 5.27E-71 | transposed | |
| Cla10g00124 | Cla-Chr10:1268952 | Cla09g01088 | Cla-Chr9:11569360 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61811 | PF16596 | MFMR_assoc | 5.90E-48 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00124 | K09060 | - | csv:101206627 | 711.835 |