Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00126 ATGAGACTATTATTGGAGAAAGTGTTTGGGGCACGTAGTGGAATATCCGCCATTCGCCGTGAAGTAGGTACTCGCAGTTCACCTTCAAGTAGGTTGTCGCTGCCACTCCGCCGCGCAGCTTGCCGGAGAAGAATCGTGGAGGGGCTAGCTCGATACTACTCTGCCATGGCGAGATCCACAAGTAAGGACGCTCAAGCTCTTTTCCAGTCTCTCCGCTCAGCTTATGCCGCCACTCCAACAACTCTCAAGATCATTGATCTCTATGTGATTTATGCTGTGTTCACCGCCCTGATCCAGGTAGCATACATGGCGATTGTTGGATCGTTCCCATTCAACTCCTTCCTCTCAGGAGTTCTTTCTTGTATCGGGACAGCTGTCCTTGCTGTTTGTCTCCGGATCCAAGTTAATAAAGAAAACAAGGAATTCAAGGATTTGGCCCCCGAACGAGCTTTTGCAGATTTCGTCCTGTGCAACCTGGTTCTCCATTTGGTGATTATCAACTTCCTTGGATAA 513 48.93 MRLLLEKVFGARSGISAIRREVGTRSSPSSRLSLPLRRAACRRRIVEGLARYYSAMARSTSKDAQALFQSLRSAYAATPTTLKIIDLYVIYAVFTALIQVAYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1303659 1307364 - ClCG10G001270.2 Cla10g00126 281785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00126 170 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 57 170 IPR003038 GO:0008250|GO:0016021
Cla10g00126 170 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 57 170 - -
Cla10g00126 170 Pfam DAD family 67 170 IPR003038 GO:0008250|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00126 K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon - csv:101204006 220.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g729 . . . . . . . . Cmo06g00635 Cmo16g01238 . . . . . Cpe14g00986 . . . . . . . . Cla10g00126 Cam10g0126 . . Clacu10g0131 Cmu10g0978 . Cone8ag0492 Cone12ag0490 . . Lsi07g01161 . . . Blo03g00884 . Bda07g00074 . . Bpe11g00314 . . . . . Cma06g00626 Cma16g01190 Car06g00561 Car16g01122 . . . . . . . . . . . . . . . . . Csa03g00134 Chy06g02173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009636 1 2 1 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 2 0 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00126 Cla_Chr10 FPKM 32.815487 36.748249 35.450298 36.061703 19.996483 20.201664 20.122925 49.130436 46.307281 46.371372