Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00138 ATGTCGTTGAACGGCTTCATCGTTTATTCCCCCGATCCTCTTTTCCAGGGGAGAATTGTTCTGTTTTTTCTCTTGAATTTTGCTTTGTTTTCAATCGATTTGTTCTTGTTTTTCTCTCTCTTCGGAAAGGATCTCGGCGACATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCGTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCTTCGGGTATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACGCCGAAGGATACGCCTGAGCTACGAGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACATCCGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAAACTGTTCTACCTTCTAGCTACACAGCCGGCGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTAGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATCTTTAAAGATCTTGCAGTTCTAGTCCATGAACAGGGAGCTATGATTGGTTTGTGTGTAGCTCAAGTTATTCATGTATATATCGCCATGGTTGTAGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGTTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA 1014 43.0 MSLNGFIVYSPDPLFQGRIVLFFLLNFALFSIDLFLFFSLFGKDLGDMSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIGLCVAQVIHVYIAMVVDDIGSNIEGAHAATSQGTTQLAKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1458241 1463513 + ClCG10G001400.2 Cla10g00138 281797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00138 337 PANTHER SYNTAXIN 52 335 IPR045242 -
Cla10g00138 337 SMART SynN_4 63 175 IPR006011 GO:0016020
Cla10g00138 337 CDD SNARE_Qa 231 305 - -
Cla10g00138 337 Pfam Syntaxin-like protein 78 177 IPR006011 GO:0016020
Cla10g00138 337 Gene3D - 68 181 - -
Cla10g00138 337 Pfam SNARE domain 281 332 IPR000727 -
Cla10g00138 337 SUPERFAMILY t-snare proteins 71 263 IPR010989 GO:0016020|GO:0016192
Cla10g00138 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 266 IPR000727 -
Cla10g00138 337 CDD SynN 71 194 IPR006011 GO:0016020
Cla10g00138 337 Gene3D - 221 337 - -
Cla10g00138 337 PANTHER SYNTAXIN OF PLANTS PROTEIN 52 335 - -
Cla10g00138 337 SMART tSNARE_6 223 306 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00505 Cla-Chr9:4769104 Cla10g00138 Cla-Chr10:1458241 5.20E-06 dispersed
Cla10g00138 Cla-Chr10:1458241 Cla03g00522 Cla-Chr3:5768142 3.27E-07 dispersed
Cla10g01736 Cla-Chr10:33181092 Cla10g00138 Cla-Chr10:1458241 5.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00138 - K08488 bhj:120089793 449.129