Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00138 | ATGTCGTTGAACGGCTTCATCGTTTATTCCCCCGATCCTCTTTTCCAGGGGAGAATTGTTCTGTTTTTTCTCTTGAATTTTGCTTTGTTTTCAATCGATTTGTTCTTGTTTTTCTCTCTCTTCGGAAAGGATCTCGGCGACATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCGTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCTTCGGGTATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACGCCGAAGGATACGCCTGAGCTACGAGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACATCCGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAAACTGTTCTACCTTCTAGCTACACAGCCGGCGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTAGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATCTTTAAAGATCTTGCAGTTCTAGTCCATGAACAGGGAGCTATGATTGGTTTGTGTGTAGCTCAAGTTATTCATGTATATATCGCCATGGTTGTAGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGTTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA | 1014 | 43.0 | MSLNGFIVYSPDPLFQGRIVLFFLLNFALFSIDLFLFFSLFGKDLGDMSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIGLCVAQVIHVYIAMVVDDIGSNIEGAHAATSQGTTQLAKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1458241 | 1463513 | + | ClCG10G001400.2 | Cla10g00138 | 281797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00138 | 337 | PANTHER | SYNTAXIN | 52 | 335 | IPR045242 | - | |
Cla10g00138 | 337 | SMART | SynN_4 | 63 | 175 | IPR006011 | GO:0016020 | |
Cla10g00138 | 337 | CDD | SNARE_Qa | 231 | 305 | - | - | |
Cla10g00138 | 337 | Pfam | Syntaxin-like protein | 78 | 177 | IPR006011 | GO:0016020 | |
Cla10g00138 | 337 | Gene3D | - | 68 | 181 | - | - | |
Cla10g00138 | 337 | Pfam | SNARE domain | 281 | 332 | IPR000727 | - | |
Cla10g00138 | 337 | SUPERFAMILY | t-snare proteins | 71 | 263 | IPR010989 | GO:0016020|GO:0016192 | |
Cla10g00138 | 337 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 228 | 266 | IPR000727 | - | |
Cla10g00138 | 337 | CDD | SynN | 71 | 194 | IPR006011 | GO:0016020 | |
Cla10g00138 | 337 | Gene3D | - | 221 | 337 | - | - | |
Cla10g00138 | 337 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 52 | 335 | - | - | |
Cla10g00138 | 337 | SMART | tSNARE_6 | 223 | 306 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00505 | Cla-Chr9:4769104 | Cla10g00138 | Cla-Chr10:1458241 | 5.20E-06 | dispersed | |
Cla10g00138 | Cla-Chr10:1458241 | Cla03g00522 | Cla-Chr3:5768142 | 3.27E-07 | dispersed | |
Cla10g01736 | Cla-Chr10:33181092 | Cla10g00138 | Cla-Chr10:1458241 | 5.80E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00138 | - | K08488 | bhj:120089793 | 449.129 |