Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00141 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCTTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACTGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAGGCAATGGATTCTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTTGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGCGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCATGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGGTAATTGCAGAGAGTAAATAA 2595 44.66 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVVIAESK 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1490923 1495240 + ClCG10G001420.1 Cla10g00141 281800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00141 864 CDD HAD_TPP 595 831 - -
Cla10g00141 864 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Cla10g00141 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Cla10g00141 864 Gene3D Glycogen Phosphorylase B; 56 314 - -
Cla10g00141 864 SUPERFAMILY HAD-like 594 839 IPR036412 -
Cla10g00141 864 TIGRFAM T6PP: trehalose-phosphatase 593 840 IPR003337 GO:0003824|GO:0005992
Cla10g00141 864 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 596 798 IPR006379 -
Cla10g00141 864 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 846 - -
Cla10g00141 864 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Cla10g00141 864 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0003824|GO:0005992
Cla10g00141 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cla10g00141 864 Gene3D - 723 854 IPR023214 -
Cla10g00141 864 Gene3D - 593 710 IPR023214 -
Cla10g00141 864 Gene3D Glycogen Phosphorylase B; 315 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00141 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101207192 1707.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00681 Cla-Chr3:8237610 Cla10g00141 Cla-Chr10:1490923 1.24E-145 dispersed
Cla05g02526 Cla-Chr5:36613469 Cla10g00141 Cla-Chr10:1490923 0 dispersed
Cla06g01651 Cla-Chr6:30009658 Cla10g00141 Cla-Chr10:1490923 0 dispersed
Cla07g00244 Cla-Chr7:2689452 Cla10g00141 Cla-Chr10:1490923 0 dispersed
Cla10g00141 Cla-Chr10:1490923 Cla11g01682 Cla-Chr11:30400639 1.13E-135 dispersed
Cla10g00284 Cla-Chr10:3750012 Cla10g00141 Cla-Chr10:1490923 5.31E-06 dispersed
Cla10g00141 Cla-Chr10:1490923 Cla01g02336 Cla-Chr1:37151668 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g697 Blo02g00987 Blo03g00107 Bda06g01263 Bda08g00635 Bpe05g00523 Bpe07g00231 . . . Cmo16g01224 . . . . Sed04g0857 . . Bhi11g00016 Tan01g2210 Cmetu06g2024 . . Mch10g1678 . Cla10g00141 . . . . . . . . . . Lsi07g01179 . . Cme06g02456 . . . . . . Bma05g00708 Bma12g00232 . . . . Cma16g01174 . . . . . . . . . . . . . . . . . . . Csa03g00151 Chy06g02157 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla11g01682 . 83 641 Trehalose Biosynthesis Gene Families AT1G17000 60.1 1.7e-190 663.3
Cla03g00681 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.8e-190 662.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002818 2 2 2 3 2 1 1 1 1 1 1 1 3 1 1 4 1 3 4 1 1 2 2 2 2 1 2 3 4 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00141 Cla_Chr10 FPKM 28.073439 30.445656 27.125294 26.618713 24.13093 24.067957 23.975004 30.621811 27.12867 28.383211