Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00141 | ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCTTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACTGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAGGCAATGGATTCTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTTGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGCGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCATGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGGTAATTGCAGAGAGTAAATAA | 2595 | 44.66 | MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVVIAESK | 864 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1490923 | 1495240 | + | ClCG10G001420.1 | Cla10g00141 | 281800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00141 | 864 | CDD | HAD_TPP | 595 | 831 | - | - | |
| Cla10g00141 | 864 | Pfam | Glycosyltransferase family 20 | 63 | 546 | IPR001830 | GO:0003824|GO:0005992 | |
| Cla10g00141 | 864 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 846 | IPR001830 | GO:0003824|GO:0005992 | |
| Cla10g00141 | 864 | Gene3D | Glycogen Phosphorylase B; | 56 | 314 | - | - | |
| Cla10g00141 | 864 | SUPERFAMILY | HAD-like | 594 | 839 | IPR036412 | - | |
| Cla10g00141 | 864 | TIGRFAM | T6PP: trehalose-phosphatase | 593 | 840 | IPR003337 | GO:0003824|GO:0005992 | |
| Cla10g00141 | 864 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 596 | 798 | IPR006379 | - | |
| Cla10g00141 | 864 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 | 1 | 846 | - | - | |
| Cla10g00141 | 864 | CDD | GT20_TPS | 63 | 546 | IPR001830 | GO:0003824|GO:0005992 | |
| Cla10g00141 | 864 | Pfam | Trehalose-phosphatase | 597 | 829 | IPR003337 | GO:0003824|GO:0005992 | |
| Cla10g00141 | 864 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 63 | 550 | - | - | |
| Cla10g00141 | 864 | Gene3D | - | 723 | 854 | IPR023214 | - | |
| Cla10g00141 | 864 | Gene3D | - | 593 | 710 | IPR023214 | - | |
| Cla10g00141 | 864 | Gene3D | Glycogen Phosphorylase B; | 315 | 531 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00681 | Cla-Chr3:8237610 | Cla10g00141 | Cla-Chr10:1490923 | 1.24E-145 | dispersed | |
| Cla05g02526 | Cla-Chr5:36613469 | Cla10g00141 | Cla-Chr10:1490923 | 0 | dispersed | |
| Cla06g01651 | Cla-Chr6:30009658 | Cla10g00141 | Cla-Chr10:1490923 | 0 | dispersed | |
| Cla07g00244 | Cla-Chr7:2689452 | Cla10g00141 | Cla-Chr10:1490923 | 0 | dispersed | |
| Cla10g00141 | Cla-Chr10:1490923 | Cla11g01682 | Cla-Chr11:30400639 | 1.13E-135 | dispersed | |
| Cla10g00284 | Cla-Chr10:3750012 | Cla10g00141 | Cla-Chr10:1490923 | 5.31E-06 | dispersed | |
| Cla10g00141 | Cla-Chr10:1490923 | Cla01g02336 | Cla-Chr1:37151668 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00141 | K16055 | - | csv:101207192 | 1707.19 |