Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00159 ATGTTCATCACAAATAAATCCCAATCCAATCGCCCGACATTTCTCTCACTCCACAATTGGAGACCCAGAATTATTCTCTTTTTCCCATTCTGTTTCTTCTCGAATCCCAATCGCATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCTGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTGCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGATGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTAGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCGGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCATGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGGGGCGGCGGCGGCAGCAGCCATGGAATGATGTAA 2085 49.64 MFITNKSQSNRPTFLSLHNWRPRIILFFPFCFFSNPNRMTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSSHGMM 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1703280 1705364 + ClCG10G001590.2 Cla10g00159 281818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00159 694 CDD bHLH_AtAIB_like 504 580 - -
Cla10g00159 694 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 507 556 IPR011598 GO:0046983
Cla10g00159 694 MobiDBLite consensus disorder prediction 415 434 - -
Cla10g00159 694 PANTHER MYC 47 683 IPR045084 GO:0003700|GO:0006355
Cla10g00159 694 Pfam Helix-loop-helix DNA-binding domain 511 556 IPR011598 GO:0046983
Cla10g00159 694 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 111 291 IPR025610 -
Cla10g00159 694 Coils Coil 553 580 - -
Cla10g00159 694 MobiDBLite consensus disorder prediction 88 103 - -
Cla10g00159 694 MobiDBLite consensus disorder prediction 334 357 - -
Cla10g00159 694 MobiDBLite consensus disorder prediction 388 448 - -
Cla10g00159 694 PANTHER TRANSCRIPTION FACTOR MYC2 47 683 - -
Cla10g00159 694 SMART finulus 513 562 IPR011598 GO:0046983
Cla10g00159 694 MobiDBLite consensus disorder prediction 482 517 - -
Cla10g00159 694 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 510 577 IPR036638 GO:0046983
Cla10g00159 694 MobiDBLite consensus disorder prediction 77 105 - -
Cla10g00159 694 MobiDBLite consensus disorder prediction 388 407 - -
Cla10g00159 694 Gene3D - 506 583 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g01129 Cla10g00159 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01570 Cla-Chr2:30378559 Cla10g00159 Cla-Chr10:1703280 4.60E-14 dispersed
Cla03g01488 Cla-Chr3:30391505 Cla10g00159 Cla-Chr10:1703280 2.08E-10 dispersed
Cla07g00024 Cla-Chr7:270277 Cla10g00159 Cla-Chr10:1703280 1.25E-08 dispersed
Cla10g00083 Cla-Chr10:808041 Cla10g00159 Cla-Chr10:1703280 3.10E-23 dispersed
Cla02g00729 Cla-Chr2:8874435 Cla10g00159 Cla-Chr10:1703280 5.36E-19 transposed
Cla05g00088 Cla-Chr5:854614 Cla10g00159 Cla-Chr10:1703280 2.16E-25 transposed
Cla06g00258 Cla-Chr6:3216750 Cla10g00159 Cla-Chr10:1703280 1.40E-25 transposed
Cla07g00074 Cla-Chr7:856632 Cla10g00159 Cla-Chr10:1703280 2.05E-15 transposed
Cla11g00989 Cla-Chr11:18870608 Cla10g00159 Cla-Chr10:1703280 5.90E-07 transposed
Cla10g00159 Cla-Chr10:1703280 Cla09g01129 Cla-Chr9:12559892 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61816 PF14215 bHLH-MYC_N 1.00E-51 CL0161 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00159 K13422 - csv:101205372 1103.58