Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00170 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTGAGTGGCAGCGGTAACGTCACCAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACAAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAATAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.69 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1791806 1792570 - ClCG10G001700.1 Cla10g00170 281829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00170 254 MobiDBLite consensus disorder prediction 205 236 - -
Cla10g00170 254 MobiDBLite consensus disorder prediction 22 70 - -
Cla10g00170 254 CDD DUF296 80 191 IPR005175 -
Cla10g00170 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 253 IPR014476 GO:0003680
Cla10g00170 254 PIRSF ESCAROLA 8 250 IPR014476 GO:0003680
Cla10g00170 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 193 IPR005175 -
Cla10g00170 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 37 253 - -
Cla10g00170 254 Gene3D - 79 208 - -
Cla10g00170 254 MobiDBLite consensus disorder prediction 210 236 - -
Cla10g00170 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Cla10g00170 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00170 Cla-Chr10:1791806 Cla06g00647 Cla-Chr6:7991313 1.63E-60 dispersed
Cla10g00170 Cla-Chr10:1791806 Cla05g00274 Cla-Chr5:2486749 3.39E-106 wgd
Cla10g00170 Cla-Chr10:1791806 Cla09g01139 Cla-Chr9:12782911 1.14E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00170 - - csv:101210132 408.683